KEGG   Shewanella decolorationis: D0436_02735
Entry
D0436_02735       CDS       T09167                                 
Name
(GenBank) AMP-binding protein
  KO
K01897  long-chain-fatty-acid---CoA ligase [EC:6.2.1.3]
Organism
sdeo  Shewanella decolorationis
Pathway
sdeo00061  Fatty acid biosynthesis
sdeo00071  Fatty acid degradation
sdeo01100  Metabolic pathways
sdeo01212  Fatty acid metabolism
sdeo02024  Quorum sensing
sdeo04146  Peroxisome
Module
sdeo_M00086  beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:sdeo00001]
 09100 Metabolism
  09103 Lipid metabolism
   00061 Fatty acid biosynthesis
    D0436_02735
   00071 Fatty acid degradation
    D0436_02735
 09140 Cellular Processes
  09141 Transport and catabolism
   04146 Peroxisome
    D0436_02735
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    D0436_02735
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01004 Lipid biosynthesis proteins [BR:sdeo01004]
    D0436_02735
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sdeo04147]
    D0436_02735
Enzymes [BR:sdeo01000]
 6. Ligases
  6.2  Forming carbon-sulfur bonds
   6.2.1  Acid-thiol ligases
    6.2.1.3  long-chain-fatty-acid---CoA ligase
     D0436_02735
Lipid biosynthesis proteins [BR:sdeo01004]
 Acyl-CoA ligase
  Long/very long chain acyl-CoA ligase
   D0436_02735
Exosome [BR:sdeo04147]
 Exosomal proteins
  Exosomal proteins of breast milk
   D0436_02735
  Exosomal proteins of breast cancer cells
   D0436_02735
SSDB
Motif
Pfam: AMP-binding AMP-binding_C_3 AMP-binding_C
Other DBs
NCBI-ProteinID: QDZ89458
UniProt: A0A5B8QSW5
LinkDB
Position
4590657..4592321
AA seq 554 aa
MDKVIKTPIEMLTHWANTRGDEIYLRQPIKGQYLDFTWNEVQEKVQQLAGALRHLGLEPG
DKIAVLSKNCAEWFITDLALMHGGYISVPIYPTANTDTIRYVLQHSGAKAIFLGKLDHWA
DQEAGVGGELLRLAMPYETMPAQYQWEQLLKMGNPLIEAPLPELDQIMTLIYTSGSTGHP
KGAIQTFASYGWTCQAVVRDLRTNGNDRLLSYLPLAHITERVAIEGSSFYSGSTVAFVES
LDSFVADVQRAKPTVFFSVPRLWSLFQKNIIDKIGVGKLNLLLKIPLISSLVKHKIHKGL
GLNHCRLLGSGSAPIPPSLIHWYHSIGLDICEAWGMTENCAYSIINYPFDVRKIGTVGKP
VQDCQIRQGEDGELLLKSPGLMTAYYLQPEATAAAFDPDGFFHTGDLCAIDADGCVTITG
RVKDNFKTAKGKYVAPVPIERKLAQDPHVELICVIGSGLPHPVALVQLSEGANLQAREEV
RASLKATLDSVNPHLESHEHVDAIVVVSEPWTIENDVLTPTLKIKRHVLEKAFSERVDGI
RGAQVRWEDELSAK
NT seq 1665 nt   +upstreamnt  +downstreamnt
atggataaagtgattaagacgccaattgaaatgctgacacactgggcgaatacacgtggg
gatgagatttacttgcgccagcccatcaagggtcaataccttgatttcacgtggaatgaa
gtgcaagaaaaagtccagcaactcgcgggtgcactgcgccatttaggcctagaaccgggc
gataagattgccgttctctctaaaaactgtgccgaatggtttattaccgaccttgccctg
atgcacggcggctatatcagcgttcccatctacccaactgctaatacagatactatccgc
tatgtgttgcaacatagcggtgccaaagcgattttcctcggcaagctcgaccactgggcc
gatcaagaagccggcgtaggcggcgaattacttcgccttgccatgccctatgagaccatg
ccggctcaatatcaatgggaacaactgctcaagatgggcaaccctttgattgaagcaccg
ttaccagagcttgatcagatcatgacgctgatttatacctctggctcaacgggtcacccc
aaaggggcgattcagacgtttgccagctatggctggacttgccaagcggttgtgcgcgat
ttacgtaccaatggcaacgacagattattgtcctacttaccgttagcgcatattaccgag
cgtgtagcgatcgaaggctcgtctttctattccggcagtaccgtagccttcgtcgaaagc
ttagactccttcgttgccgatgtgcagcgtgctaaaccaacggtgtttttctcggttccg
cggctgtggagcctgttccaaaagaacattatcgacaagattggtgttggcaaactcaat
ctattgcttaagatcccgctgattagcagcctagtaaaacacaagatccacaaagggtta
gggctcaaccattgccgcttactcggctctggctcggcgcctattccgccttcactcatt
cattggtaccacagcattggcttggatatttgtgaagcctggggcatgacggaaaactgt
gcttactccatcattaactacccctttgatgtgcgcaaaatcggtactgtgggtaaaccc
gtgcaggattgccaaatccgtcaaggtgaagatggcgaactgctactgaagagtcctggc
ctgatgacagcctattatctgcaacccgaagcgacagcggcggccttcgatcccgatggt
ttcttccatactggcgatctctgtgccatcgatgccgatggttgtgtaactatcaccggc
cgggtcaaggacaactttaaaaccgccaagggtaaatacgtcgccccagtgcccattgaa
cgtaagctcgcacaggatccccatgtggagctgatttgcgtcattggttcaggcctgccg
catccagtcgcgttagtgcaactttctgaaggtgccaacctacaagcccgtgaggaagtt
cgtgcatctttaaaagcgacactcgacagtgtgaatccacatttagaatcccatgagcat
gtggatgcgattgtggttgtgagcgagccttggaccattgaaaacgatgtgttaaccccg
acactgaagatcaaacgtcatgtgctcgagaaggcatttagcgagcgtgtcgacggtatt
cgcggtgcacaagtacgctgggaagatgagttatctgcaaaataa

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