Shewanella decolorationis: D0436_02905
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Entry
D0436_02905 CDS
T09167
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
sdeo
Shewanella decolorationis
Pathway
sdeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D0436_02905 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdeo03019
]
D0436_02905 (rhlB)
Enzymes [BR:
sdeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D0436_02905 (rhlB)
Messenger RNA biogenesis [BR:
sdeo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D0436_02905 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
CCDC138_C
Motif
Other DBs
NCBI-ProteinID:
QDZ89490
UniProt:
A0A5B8QS77
LinkDB
All DBs
Position
complement(4553739..4555058)
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AA seq
439 aa
AA seq
DB search
MSQTHLSNQKFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKT
MAFLVATFNHLLSTPVPENRQLNQPRAIIMAPTRELAIQIAKDAILLAKHSHLKVGIVYG
GESYDVQRKTLDQGVDILIGTTGRIIDYVRQGIINLGGIQAVVLDEADRMFDLGFIKDIR
FLFRRMPSADQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQ
EDKMRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILE
QFTQGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFA
CEEYALNLPAIESYINHSIPVSNYDRDALLDDIPPPVKIHRKHPAGARNLRERSGAGRPQ
GAHRSGGRPPRHDRTRRQP
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgagccaaacacatttatctaatcaaaaatttgccgaccttcctctacatccagaggtt
aaacaggcacttgccgagaacggcttcgaattttgtacgccaattcaggcgttatcatta
cccgtattacttcaatcaaaagatatcgccggccaagctcaaacgggcacaggtaagact
atggcgtttttggttgccacatttaaccatttattgtcgacaccagtccctgagaaccgc
cagctaaatcagccgcgcgctattattatggctcctacacgcgagctggcgattcaaatc
gccaaagacgcaattctcctcgccaaacacagccacttaaaagtcggcattgtctatggc
ggtgaaagctatgatgtgcagcgcaagacgctcgatcaaggtgtagacattctgattggt
acgaccgggcgcatcattgattatgttcgtcaaggcattatcaatctcggcggtattcaa
gctgtcgtgttagatgaagccgatcgcatgtttgacctcggttttatcaaggatatccgt
ttcctcttccgacgtatgcctagtgccgatcagcgcctgaatatgctgttttcggcgaca
ctttcgatgaaagttcaagaactcgcctacgatcatatgaatgatcctgtgaaagtcgaa
attgcccccgaagaaaaaacctccaagaacatcaaagaagaaattttctatccttcccaa
gaagacaaaatgcgtttgctgctgacgctgattgaagaagattggccagagaaagccatt
gttttttcaaacactaagcatagctgtgaaaacctatggtcttggcttgaaggtgatggt
catcgcgtcggtttgctgacgggtgatgtgccgcagaagaaacgtattcgtattcttgag
caatttacccaaggccaattagatattttggtcgcgaccgatgttgcggcgcgcgggctg
catatttccgatgtttcccacgtctacaattatgatttacctgatgattgtgaagattac
gtccaccgtattggtcgtactgggcgtgcgggtaacaaaggtgtctctgtcagttttgcc
tgtgaagaatacgcactgaatctgcctgcgattgaaagctatatcaatcactccattcct
gtgagtaattatgatcgtgatgcgctgctggatgatattccgccgccggttaaaattcat
cgcaaacatcccgcgggtgcacgcaatttacgtgagcgctctggtgctgggcgcccacaa
ggtgcccatcgtagtggtggacgtccacctcgccatgaccggacgcgtagacagccttaa
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