Shewanella decolorationis: D0436_04685
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Entry
D0436_04685 CDS
T09167
Name
(GenBank) OsmC domain/YcaO domain-containing protein
KO
K09136
ribosomal protein S12 methylthiotransferase accessory factor
Organism
sdeo
Shewanella decolorationis
Brite
KEGG Orthology (KO) [BR:
sdeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sdeo03009
]
D0436_04685
Ribosome biogenesis [BR:
sdeo03009
]
Prokaryotic type
ribosomal protein modification factors
D0436_04685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YcaO_C
YcaO
OsmC
GNA1162-like
Motif
Other DBs
NCBI-ProteinID:
QDZ89823
UniProt:
A0A5B8QTN2
LinkDB
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Position
875840..878026
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AA seq
728 aa
AA seq
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MEIKVNFLDNLRLEAKFDDFTVTADQPIRYKGDGSAPSPFDYFLASSALCAAYFVKVYCK
SRDIPTDNIRLSQNNIVDPEDRYNQIFQINVELPDDISDKDREGILRSIDRCTVKKVVQT
GPEFRIETVENLDADANAMLMGQPGGDSSTYILGKDLPLEQTIANMTGILAELGMKIEIS
SWRNIVPNVWSLHIRDAASPMCFTNGKGATKESALCSALGEFIERLNNNFFYNDQFFGIE
IANSEFVHYPNEKWFALEEDDALPAGLLDDYCLEIYNPDEELCGSHLIDTNSGNRERGIC
AIPYTRKSDGETVYFPSNLIENLFLSNGMSAGNNIKEAEVQCLSEIFERAVKRQIIEQEI
VLPDVPMSVLEKYPSILAGIKGLEEQGFPVVVKDASLGGQFPVMCVTLMNPKTGGVFASF
GAHPSFEVALERSLTELLQGRSFEGLNDVPKPTFNSMAVSEPENFVEHFIDSTGVISWRF
FSSKHDYEFCEWDFSGTNEEEADRLFGILEDLGKEVYVAEFTELGASACRILVPDYSEVY
PVEDLIWDNTNKALDYREDILNLHSLSTKQLVNLVNRLEESQLDNYTDIRTLIGIVFDEN
TVWGKLTIIELKILIYLALGAHEEALELVGEFLQFNDNTVKRNLFYQAMSAVLEVTLDED
LELEDFSHNFTRMFGAEVMEQVVGSVTGKIRFSGLTKTSMQLEGIEPHLRLIESYKKLHA
ARKAKAAN
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcaaagttaattttctcgacaacctgagactcgaagccaagttcgatgatttt
acggtcacggccgatcagcccatccgttataagggtgatggctcggcgccgagccccttc
gattatttcttagcttcttcggcgctgtgtgcggcctactttgtgaaggtatattgtaaa
tcccgcgatattccgacggacaatatccgcctgtcgcaaaacaatattgtcgacccagaa
gatcgctacaaccagattttccagatcaatgtcgaattgcccgatgatatttcggataaa
gatcgcgaaggtattttgcgctctatcgaccgctgcacagtgaaaaaagtagtgcagact
ggcccagagtttagaatcgaaaccgttgaaaacctcgatgccgacgcaaatgccatgctg
atgggtcaacctggcggcgatagtagcacctatattttgggtaaagacttaccactagag
cagaccattgccaatatgacgggcattttggctgagctggggatgaagattgagatctcc
tcatggcgtaatatcgtgcccaatgtgtggtcgctgcatatccgtgatgccgcatcgccc
atgtgttttaccaatggtaaaggcgcaaccaaagagagcgcgttgtgctcggccctcggc
gagtttatcgagcgtttaaacaataacttcttctataacgatcaattctttgggattgaa
atcgctaacagcgagtttgtgcattacccgaatgaaaaatggtttgccctcgaggaagat
gacgccctgccagcgggcctgttagacgactactgcctcgagatttacaatcccgacgag
gagctgtgtggctcgcatcttatcgacactaactcgggcaatcgtgagcgcggtatttgt
gcgattccttatacccgtaaatccgatggcgagactgtgtacttcccatcaaacctgatt
gaaaacctgttcttaagcaatggcatgagcgcgggtaacaacatcaaagaagccgaagtc
cagtgtctctctgaaatcttcgagcgcgcggtgaaacgccaaattatcgagcaagaaatc
gttttgccagacgtgcctatgtcggtgttagaaaaatacccaagcattcttgcgggcatt
aagggtttagaagaacaaggcttccccgtggtggtgaaagacgcctccttaggcggccag
ttccctgtgatgtgcgtgacgctgatgaacccgaaaaccggcggcgtatttgcctccttc
ggtgcccacccaagctttgaagtggcattggagcgcagcctgaccgaattactccaaggt
cgcagttttgaaggcttaaacgatgtgccaaaaccgacctttaacagcatggcggtgagc
gagcctgaaaactttgtcgaacactttatcgactcaacgggcgtgatctcctggcgcttc
tttagcagcaagcatgactatgagttctgcgaatgggatttctccggcactaacgaagag
gaagcggaccgcttattcggcattttagaagatctcggtaaagaggtgtatgttgccgaa
tttaccgaattaggcgcatcggcttgccgtattttagtgcctgattactctgaagtttat
ccagtagaagacctaatttgggacaacaccaacaaggcgctggattaccgtgaagatatt
cttaatctgcattccttaagcactaagcaattggttaacctagtcaatcgtttagaagaa
agtcagctcgataactacacagatattcgtacccttattggtattgtgtttgatgaaaat
accgtctggggcaagttgacgattatcgaacttaagatcctgatttatttggcactgggt
gcgcatgaagaggcgctggaattagtcggcgagtttttgcaatttaacgacaataccgtg
aagcgcaatctgttctaccaagccatgagcgcggtattggaagtgacgctggatgaagac
cttgaactcgaagattttagccataactttacccgcatgtttggcgcggaagtgatggaa
caagtggttggtagcgtcacaggtaaaatccgctttagcggcctaaccaagaccagcatg
caactcgaaggaatagagccgcatttacgcttaatcgaaagctataaaaaactgcacgct
gcccgcaaggccaaagcggcgaactaa
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