Shewanella decolorationis: D0436_05515
Help
Entry
D0436_05515 CDS
T09167
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sdeo
Shewanella decolorationis
Pathway
sdeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D0436_05515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdeo03019
]
D0436_05515
Enzymes [BR:
sdeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D0436_05515
Messenger RNA biogenesis [BR:
sdeo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D0436_05515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QDZ89981
UniProt:
A0A5B8QVL2
LinkDB
All DBs
Position
complement(1063769..1065430)
Genome browser
AA seq
553 aa
AA seq
DB search
MSFSSLGLSAPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL
ELLSKGHKAKAGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKL
RHGVDILVATPGRLLDLEQQKAVKFNQLEVLVLDEADRMLDMGFIRDIKKILAMLPAKRQ
NLMFSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSALLIQLIKQ
ENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVAT
DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGALGQAVSLVSNEETKLLRDIER
LINRVLERQEVEGFSPVHALPESTLNAHGKENKIKAVASQRKHRSAGKPTPRAGTGRDGR
KTSENSSNPATQQKSAKTQPNQGQRNTQHQRTQPPEQQNQQGEHKRPQAAKNAEHKNSHS
ITEQGRSPKPQHKHSQRGKSAANSTNGEHKPAKSRPQQTDNAKARHQDRRQPSAKPTRNA
AKNELSSVSNKVT
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgagtttttcctccctaggtttatctgctccaatccaaaaagccgtgactgaacaaggt
tatgacacaccctctcccattcaagcacaggcgattcccgccgtactgacgggtaaagac
gtgatggctgcggcccaaacggggacaggaaaaaccgcaggctttaccttgccgttgctc
gaattactctctaaaggccataaagcgaaggcgggacaaatccgcgccctagtgctcacc
cccacgcgcgagttagcggcacaagtcagcgaaagtgttgaaacctatggtaaatatctg
ccattacgctcagcggtggtctttggtggcgtgccaattaatcctcaaattcaaaagcta
cgccatggtgtcgatatactggtcgccacgccaggccgcttattagatcttgagcagcaa
aaggcggtgaagtttaatcaactcgaagtcttagtgctggatgaagcggatcgcatgctt
gacatgggctttatccgcgatatcaaaaagatcctcgccatgttgcccgctaaacgacaa
aacctgatgttttcggcgaccttctccgatgaaatccgtgagcttgccaaaggcctagtg
aatcaaccggtagaaatttcagtaacgccacgcaacgccgcggcaaacacagtcaaacaa
tggatttgccccgtcgataagaatcaaaaatcggcgctacttattcagctaatcaagcag
gaaaactggcagcaagtcttagtgttttcacgcactaaacacggcgccaacagactggct
aagagtctgattcaagccgagatcagtgccgccgctatccatggcaacaagagccaaggc
gcacgcaccaaagccttagccgactttaagagtggtgaagtacgggtgcttgtggcgacc
gacattgcggcacgcggtttagatatagatcaattaccgcaggtcgtaaacttcgattta
cctaacgtgcccgaagattacgtgcaccgtattggccgtacagggcgcgcgggcgcctta
ggccaagccgtttccttagtcagtaacgaagaaactaagctgctcagggacattgagcgt
ttgatcaatcgcgtgcttgaaaggcaggaggttgaaggcttcagccctgttcatgcgctc
ccagagtcgaccttaaatgcccatggtaaagagaacaaaatcaaagccgtggcgagccaa
cgtaagcatcgcagcgcaggtaaaccaacgccaagagcgggtacgggccgcgatggtcgt
aaaacgtctgagaatagtagcaaccccgctactcagcaaaagagcgcaaaaacgcaacca
aaccaagggcagcgcaatactcaacaccagcgcactcagcccccagagcaacaaaatcag
caaggtgagcataagcgtccccaagctgcaaaaaacgctgagcataaaaactcgcactca
attaccgaacaaggccgctcaccaaaaccgcagcataaacattcgcaacgcggtaaaagc
gcagctaactcaaccaacggcgaacacaaacccgctaaatctcgtccacaacagacggat
aatgctaaagctaggcatcaagatcgtcgccagccgagtgcaaaacccacccgcaatgct
gcaaaaaacgaattgtcttcagtaagcaataaggtgacgtaa
DBGET
integrated database retrieval system
