Shewanella decolorationis: D0436_05685
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Entry
D0436_05685 CDS
T09167
Name
(GenBank) L,D-transpeptidase family protein
KO
K19235
L,D-transpeptidase YbiS
Organism
sdeo
Shewanella decolorationis
Brite
KEGG Orthology (KO) [BR:
sdeo00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sdeo01002
]
D0436_05685
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
sdeo01011
]
D0436_05685
Peptidases and inhibitors [BR:
sdeo01002
]
Cysteine peptidases
Family C82
D0436_05685
Peptidoglycan biosynthesis and degradation proteins [BR:
sdeo01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
D0436_05685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldt_C
YkuD
LysM
LysM2_CERK1_LYK3_4_5
Motif
Other DBs
NCBI-ProteinID:
QDZ90012
UniProt:
A0A5B8QVB8
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All DBs
Position
complement(1106528..1107442)
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AA seq
304 aa
AA seq
DB search
MSMLRTTALLLTLVFPSLSALATEYPLPSSKSRLVGENLYYTVPEGKHTLEDIAAKFQLG
LSNLLEANPGVDPFLPTPGSKLLIPQQLILPNAPREGIVINVAEMRLYYYPKGKNTVEVL
PIGIGQIGKDTPENWVTSVQRKRANPTWTPTPRIRKEYAARGEILPAVWPAGPDNPMGLY
ALYIGNLYAIHGTNASFGIGLRVSQGCVRLRHDDIEHLFKTVPVGTRVQFVNQPIKATEE
PDGKRYLAVHQPLSRTIAEFESNEPVSLSLPKDIAKFIAKADTDSAVIKKLLDERTGVPT
IINQ
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atgagtatgcttcgcaccacagctttattattgactctggtttttccgagtctttccgct
ttagcaacggaataccctttaccgtcttcaaagagtcggttagttggcgagaacctgtat
tacacagtgccagagggtaaacacaccctcgaagatattgccgctaaattccaactcggt
ctaagcaacttgctggaagcaaaccctggcgtggatcctttcctaccaacaccaggcagc
aagctattaattcctcaacagctcattctgcccaatgcgccgcgtgaaggcatagtgatc
aacgttgctgaaatgcgcctgtattactatccaaaaggtaagaacaccgttgaagtgctg
cccatcggtattggtcagattggtaaagatacccctgaaaactgggtcaccagtgttcaa
cgtaaacgcgctaacccaacttggacaccaaccccacgtattcgtaaagaatatgcggca
aggggcgaaattctgcctgcggtatggccagctggtcccgataacccaatgggactgtac
gcgctttacattggtaacttgtatgccatccatggtaccaacgccagcttcggtattggt
ttacgtgtcagccaaggctgcgtacgtttacgccacgatgacattgaacacttattcaaa
acggttccagtgggtacccgagtacaatttgtgaaccaaccgattaaagcgaccgaagag
ccagatggtaagcgctacttagccgtgcaccagccactgtcacgtaccattgcagagttt
gaatccaatgagcctgtttctctgagtttaccgaaagatatcgctaagtttattgcaaag
gctgataccgattcagccgtgattaaaaagctgctcgatgagcgtacaggcgtgccaacg
attattaatcaataa
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