Shewanella decolorationis: D0436_06695
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Entry
D0436_06695 CDS
T09167
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sdeo
Shewanella decolorationis
Pathway
sdeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D0436_06695 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdeo03019
]
D0436_06695 (pnp)
03016 Transfer RNA biogenesis [BR:
sdeo03016
]
D0436_06695 (pnp)
Enzymes [BR:
sdeo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
D0436_06695 (pnp)
Messenger RNA biogenesis [BR:
sdeo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
D0436_06695 (pnp)
Transfer RNA biogenesis [BR:
sdeo03016
]
Prokaryotic type
tRNA degradation factors
D0436_06695 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH_2
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
S1_2
Motif
Other DBs
NCBI-ProteinID:
QDZ90182
UniProt:
A0A5B8QVT1
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All DBs
Position
1330440..1332539
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AA seq
699 aa
AA seq
DB search
MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKDAEAGRDFFPLTV
NYQEKSYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFTNEVQVIITVVSVD
PQIEPDIISMIGTSAALAISGIPFSGPLGAARVGYINGEYVLNPTVTQLESSQLNLVVAG
TESAVLMVESEAHALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPAWNWTAPVANEA
LVAQVKELAEAGLAQAYQIQVKQERYAQVAVVKAAAKEALLAANPEVDLREVDGLLGSLE
KKVVRGRIIRGEPRIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERD
AQKIDSIMGERTSRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTAEEF
PYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI
LGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAI
GSHRDDISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASSN
GDATREAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN
VSDHLELNQEVTVKVMEVDRQGRVRLSIKEAQTKEPAAE
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
gtgaatccaattgtaaagagttttgagtatggtcaacatacagtcaccctggaaacaggt
gtcattgcacgtcaagcagacgctgccgttttagctagcatgggcgacacgacagtgtta
gtcactgttgttggtaaaaaagatgctgaagctggccgtgacttctttcctctgactgtt
aactatcaagaaaagagctacgcagcgggtaaaattcctggtggtttctttaagcgtgaa
ggccgtccttcagaagatgagacattaatcgctcgcctgatcgaccgtccaattcgtcct
cttttccctaatggtttcaccaacgaagttcaagttatcatcactgttgtatctgtcgat
ccacaaatcgagccggatattatttcgatgatcggtacttcggctgcgcttgccatttcg
ggtatcccattcagcggtccattaggcgcggcgcgtgtgggttacatcaatggtgaatac
gtgctgaacccaactgtgactcagttagaaagcagccaattaaacttggttgttgctggt
actgagagcgcggtattgatggttgagtcagaagctcatgccttaccagaagaagtgatg
ttaggctctgtggtttatggtcatgaccaacaacaagtggttatcaaagcgattgcagaa
ttcaaagcagaagcgggtaaacctgcttggaattggactgcaccagttgccaatgaagcc
ttagttgctcaagttaaagaattagctgaagcgggtttagcacaagcgtaccaaattcaa
gtgaagcaagagcgttatgctcaagttgcagtggttaaagccgcggcaaaagaagcgctg
ctggctgcaaacccagaagtggatttacgtgaagttgacggtctgctcggtagcttagag
aagaaagtggttcgtggtcgcatcatccgtggtgagccgcgcatcgacggacgtgagcca
gacatggttcgcgcattaagcgtattagctggcgtattaccacgtactcacggtagtgca
ctgtttacccgtggcgaaactcaagcactggtgacttgtactttaggtactgagcgtgac
gctcagaagattgatagcattatgggcgagcgtaccagccgctttatgctgcactacaac
ttccctccttactctgtgggtgaaacaggtatggtgggttcacctaagcgccgcgaaatc
ggtcacggtaaattagcatggcgcggtatcaacgcggttatgccaactgctgaagagttc
ccatacagcgttcgcgtggtttctgaaatcactgaatctaacggttcaagctctatggct
tcagtatgtggtacgtctctagcgctgatggatgctggtgtacccatcaagacttctgta
gcgggtatcgctatgggtctagtgaaagaaggcgatgacttcgttgttctgtctgacatc
ttaggtgatgaagaccacttaggtgacatggacttcaaagtagccggtactcgtgatggt
gtgactgcgctgcagatggacatcaagatcgaaggtatcaccaaagaaatcatggaaatt
gcactgcaacaagcctacggcgcacgtgtacatatcctgaacgtgatggaccaagcgatt
ggttcgcaccgtgatgatatctctgaccacgctccacgtatcacaactatcaagatcaac
ccagagaagatccgtgatgttatcggtaaaggcggcgcggtaattcgtgctctgaccgaa
gaaactggcaccactatcgaactggaagatgacggtactgtgaagattgcttcgtcaaat
ggcgatgcaacccgtgaagccatccgtcgtatcgaagaaatcacttcagaagttgaagtg
ggtcgtatctacaacggtaaagttatccgtatcgttgacttcggtgcctttgtgaacatt
ctgccaggcaaagatggtttagtgcacatttcgcaaatcagcgatgagcgtgttgctaac
gtctctgaccaccttgaactgaaccaagaagtgactgttaaagttatggaagtggatcgt
caaggtcgtgtacgtctgtcaatcaaagaagcacagacgaaagaacctgctgctgaataa
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