Shewanella decolorationis: D0436_07630
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Entry
D0436_07630 CDS
T09167
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K10941
sigma-54 dependent transcriptional regulator, flagellar regulatory protein
Organism
sdeo
Shewanella decolorationis
Pathway
sdeo02020
Two-component system
sdeo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sdeo00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
D0436_07630
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
D0436_07630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sdeo03000
]
D0436_07630
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
sdeo02035
]
D0436_07630
Transcription factors [BR:
sdeo03000
]
Prokaryotic type
Helix-turn-helix
Other families
D0436_07630
Bacterial motility proteins [BR:
sdeo02035
]
Flagellar system
Flagellar assembly proteins
Others
D0436_07630
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_activat
FleQ
AAA_lid_14
Sigma54_activ_2
HTH_8
AAA_5
AAA_16
HTH_50
Mg_chelatase
bpMoxR
AAA_7
AAA
CUE
Motif
Other DBs
NCBI-ProteinID:
QDZ90348
UniProt:
A0A5B8QWE7
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All DBs
Position
complement(3440449..3441882)
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AA seq
477 aa
AA seq
DB search
MMQTDQRILLVGTPSERLSRLCCIFEFLGEQIEIIAIEKLSACLQDTRYRALVISTETVS
VDELKSLASQYPWQPILSFGNVGELQVANILGQIEEPLNYPQLTELLHFCQVYGQVKRPQ
VPTSANQTKLFRSLVGRSEGIANVRHLISQVATSDATVLVLGQSGTGKEVVARNIHYLSE
RRDGPFIPVNCGAIPPELLESELFGHEKGSFTGAISSRKGRFELAEGGTLFLDEIGDMPL
QMQVKLLRVLQERVFERVGGTKTINADVRVVAATHRDLESMISSNEFREDLYYRLNVFPI
EMPALSDRKDDVPLLLQELVSRVYNEGRGKVRFTQRAIESLKEHAWSGNVRELSNLVERL
TILYPGGLVDVNDLPIKYRHIDVPEYSIELSEEQQERDALASIFTSEEPVEIPETRFPSE
LPPEGVNLKDLLAELEIDMIRQALEQQDNVVARAAEMLGIRRTTLVEKMRKYGMTKE
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaaacagatcaacgaattttacttgtcggaaccccatcagagcgcttaagtcgc
ttgtgttgcatttttgaatttttgggcgaacagatcgaaattatcgccatcgagaaatta
agtgcatgcctccaagatacccgttatcgtgctttggtgatcagcacagagactgtgtcc
gttgacgaattaaagtcgctcgcgagtcagtacccgtggcaacccattttgtcctttggc
aatgtgggcgagttacaggttgcaaatatccttgggcaaattgaagagccattaaactac
ccacaattaacagagctactgcatttctgtcaggtttatgggcaagtcaaacgtccacaa
gttcctaccagcgctaatcaaaccaaattattccgtagtttagtgggccgcagtgaaggc
atcgcgaatgttcgtcatttgatcagtcaggttgcgacatctgatgcgacggtgttggtg
ctcgggcagtcgggcacgggtaaggaagtggttgctcgtaatatccattacttgtctgaa
cgtcgtgacggaccttttattcccgttaactgtggcgcgattccgcctgaactactcgaa
agcgaattgtttggtcatgagaagggctcttttacgggcgccattagctcacgtaagggc
cgttttgagcttgccgaaggtggtacattatttctcgatgaaatcggcgatatgcctttg
cagatgcaggtcaaattactacgcgtgctgcaggagcgtgtctttgagcgcgtcggtggc
actaaaaccattaacgccgatgtacgcgttgtcgctgcgactcacagagatcttgaaagc
atgattagcagcaatgagttccgtgaagatctttattatcgtctcaacgtctttccgatc
gagatgccagcactaagcgatcgaaaagatgacgtgcctttactgttgcaagagctggta
agccgagtttataacgaaggccgtggcaaagttcgatttactcaacgggcgattgaatcg
ttaaaagaacacgcttggtcgggaaacgtgcgtgaactgtctaacctagttgagcgctta
acaattttatatccgggcgggttagtcgatgtgaatgacttgcctatcaagtatcgtcat
atcgatgtgcctgaatacagtatcgagctcagtgaagaacaacaggaacgtgatgcgctg
gcatctatcttcaccagtgaagagccggttgaaatccctgagacccgtttcccaagcgag
ttaccgccggaaggggtcaaccttaaggatctgctggctgagcttgaaatcgacatgatc
cgtcaagcgttagagcagcaggataacgtcgttgcgcgcgcagcagaaatgctcggtatt
cgtcgtactactttggttgaaaaaatgcgtaagtacggaatgacgaaagaatag
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