KEGG   Shewanella decolorationis: D0436_08075
Entry
D0436_08075       CDS       T09167                                 
Name
(GenBank) sigma-54 dependent transcriptional regulator
  KO
K10126  two-component system, NtrC family, C4-dicarboxylate transport response regulator DctD
Organism
sdeo  Shewanella decolorationis
Pathway
sdeo02020  Two-component system
Brite
KEGG Orthology (KO) [BR:sdeo00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    D0436_08075
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02022 Two-component system [BR:sdeo02022]
    D0436_08075
Two-component system [BR:sdeo02022]
 NtrC family
  DctB-DctD (C4-dicarboxylate transport)
   D0436_08075
SSDB
Motif
Pfam: Sigma54_activat Response_reg Sigma54_activ_2 HTH_8 AAA_5 AAA_2 AAA_7 FleQ AAA_3 HTH_50 AAA_16 AAA
Other DBs
NCBI-ProteinID: QDZ90434
UniProt: A0A5B8QVD5
LinkDB
Position
3338243..3339622
AA seq 459 aa
MSLPNSIQDYSVLIIDDEPHIGTVLVQLFELEGIKAFATTDPKGIAKLLDRDWAGVVISD
VNMPQLDGISLMQQIRQQDPDLPVVLLTGFGDIAMAVNALKQGAYDFLEKPFNNEHMLDV
VKRALDKRSLTLENRKLKKELESHNVPGPRILGHSVGILRMRHIIDQVIDTPADVLIEGE
TGTGKELVARYLHDHSSRNQANFVAINCGAIPENLIESELFGAEAGAFTGVDKLRIGKFE
YANGGTLFLDEIESTPLSLQVKLLRVLEDRKVERLGSNKSIHLDIRVIAATKVDLKSLCD
TGEFRQDLLYRLNLVTVPIPPLRDRREDIPLLFLHFARMASARYHKALIALNAEQNAILT
SHDWPGNVRELRNLAERYVLLGGEAAFAGSLGNAPSLHTSMSLLQRVEFFERVLIEEALS
HNKGSIKQTMEQLELPRKTLYDKMRKYDLDRKQYINADE
NT seq 1380 nt   +upstreamnt  +downstreamnt
atgagtctgcccaattcaattcaagactatagcgtactgatcatcgacgatgagccccat
attggcacagtgctcgtacagctttttgagctggaaggcattaaagccttcgccactacc
gatcccaaagggattgccaaattactcgacagggactgggcgggcgtggtgatttccgat
gtgaatatgccgcaactcgatggcatcagcttgatgcagcaaattcgtcagcaggaccca
gatttacccgtggtgctgctcaccggctttggcgatatcgccatggcggtcaatgcgtta
aagcaaggtgcctacgattttctcgaaaaaccctttaacaacgaacacatgctagatgtg
gtgaaacgcgccctagataaacgcagcctcaccctagagaaccgtaaattaaagaaagag
ttagaaagccataacgtgcccgggccaagaatattaggccacagtgtcggcattttgcgt
atgcgccatattatcgaccaagtaatcgacactcccgccgatgtgcttatcgaaggtgaa
acgggtacgggtaaagaattggtcgctcgctatctgcacgaccacagtagtcgtaatcag
gctaactttgtcgccattaactgcggcgcgattcccgagaacttgattgagagcgaactt
tttggcgccgaagccggagcctttaccggtgtcgataaactgcgtatcggtaagtttgag
tatgccaacggcggcacactctttttagatgaaatagaaagcacgccactgtcgttacag
gtcaaactgctgcgggtgctcgaagatcgcaaggtcgagcgcctaggctccaataagagt
attcatttggatattcgggtgattgccgccactaaggtggatttaaagtccctgtgcgac
acgggagagtttcgccaagacttgctctatcgcttaaatctagtgacagtgcccattcca
ccactcagggatcgccgcgaagatattcccttattattcttacactttgcccgtatggcc
tcggcgcgttatcacaaggcgctgattgccctcaatgccgagcagaatgctatcctcacc
tcacacgactggccaggtaatgtgcgcgagctgcgaaatctggcagaacgttatgtatta
ctcggtggtgaagccgccttcgccggcagcttaggtaatgcaccgagtctgcataccagc
atgtcgctgctgcaacgggtcgagttttttgagcgggtattgattgaagaagccctaagt
cataacaagggcagcattaagcagaccatggaacaactcgaactgccccgtaaaactttg
tacgacaagatgcgtaagtacgatttagaccgcaaacaatatattaacgccgacgaatag

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