Shewanella decolorationis: D0436_08145
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Entry
D0436_08145 CDS
T09167
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
sdeo
Shewanella decolorationis
Pathway
sdeo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sdeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
D0436_08145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sdeo03000
]
D0436_08145
03400 DNA repair and recombination proteins [BR:
sdeo03400
]
D0436_08145
Enzymes [BR:
sdeo01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
D0436_08145
Transcription factors [BR:
sdeo03000
]
Prokaryotic type
Helix-turn-helix
AraC family
D0436_08145
DNA repair and recombination proteins [BR:
sdeo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
D0436_08145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
HTH_3
DUF6233
Motif
Other DBs
NCBI-ProteinID:
QDZ90442
UniProt:
A0A5B8QWJ1
LinkDB
All DBs
Position
complement(3324061..3325689)
Genome browser
AA seq
542 aa
AA seq
DB search
MKQTSVSLNSAPKPPFEQASSDVQDCQISAGICREARMSRDPRFDGKFFVGVLSTGIYCR
TVCPAVAPKEENVRYFDSAIKAAQAGLRPCLRCRPDSAPSSNPWKGTNTTLDRAIGLIEA
GALSGEHGLTVEALADKLGISSRYLNKLFTAGFGTSPKQFALYRQLLFAKQLLHQTHLPI
TQVALAAGFNSIRRFNEAFQQALQLTPTQLRKSSQKSTAKIDDGESVELVCSQEMPAHSL
SLYQYYRPPLDWSAQFAFYRLRAVAGMEWFSETEDSHAHGAIDPNTPLEYGRTLQLEDIR
AVVHIFHEAPLHRFKITLTLTPDSPLSGLQKLITQVRRILDLDADMQQIEHNLEDLTDIK
LSSKSGLRIPGAGTVFEAGCRAVLGQQVSVVQATKLLNILVEAYGERFSLNGREYLLFPT
PQAIREASLDELKMPGARKLALNALAAFICDQPEAPVDEWIGVKGIGPWTIAYAKMRGLG
DPNIFLHTDLIVKKKLLASVAAQKGLDIEAVKQLDYTTLAQRVSADIAPWGSYLTFQLWS
NA
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagacaagcgtgagcctaaattcagccccaaaaccgccattcgagcaggcatca
agcgacgtgcaggattgccaaatatccgccgggatttgccgtgaagcgcgcatgagccgc
gatccacgttttgacggtaagttctttgtgggggtgttaagtacggggatttattgccga
acagtgtgccccgcagtggcgccgaaggaagaaaatgttcgttattttgactcggccatt
aaagctgcgcaggcgggacttagaccttgtctgcgttgccgccccgacagtgcccctagc
tctaatccgtggaaaggtactaacacaaccttagacagagcgataggcttgattgaagct
ggcgccttatctggcgagcatggattaacggtcgaggccttggcagacaaacttgggatc
agcagccgttatttaaataagttatttactgcaggatttggcacttcacctaaacaattt
gccctctatcgtcagttattgttcgcaaaacagttgttacatcaaacgcatttgcccatc
acacaggtcgcccttgccgcaggttttaacagtattcgtcgtttcaacgaggcgtttcag
caggcgctgcaattaacgcccacacagttacgaaaatcgagccagaaatcgacagcgaaa
atagacgacggggagagtgtcgaactcgtttgttcgcaggagatgccagcgcacagcttg
agtctgtatcagtactaccggccgccactcgattggtcggcgcaattcgccttttatcgc
ctgcgcgccgtcgcgggcatggaatggttcagtgaaacagaagactctcacgcccatggg
gcgattgacccaaatacgccacttgagtatggtcgcactctgcaacttgaggatatccgc
gctgtggtgcatatcttccatgaggcgcctttgcatcgctttaaaatcacactgacgtta
acacctgactcgcccttatcgggcctacaaaagctcatcacccaagtgcgacgcatttta
gatctcgatgccgacatgcagcagattgaacacaatttagaagacttgactgatattaaa
ctcagtagcaaatccgggcttaggatcccgggcgctggcactgtgtttgaggcgggttgt
cgagcagtcttaggccagcaggtgagcgtagtgcaggccactaaattactgaatatattg
gtcgaagcctatggcgagcgctttagtttaaacggacgcgaatatctactattccccacg
ccgcaggcgattcgtgaggcgagtctcgatgagcttaaaatgcccggcgcgcgtaaactg
gcgctcaatgcgcttgcggcgtttatctgtgatcagcccgaagcaccagtcgatgagtgg
attggggtaaaaggcatcggcccttggaccattgcctatgccaaaatgcgaggacttggc
gatccgaatatcttcttgcacacggatttaattgttaaaaaaaaattattagccagtgtt
gccgcgcaaaaaggcttggatattgaagcggtaaagcagctggattatacaacgcttgca
cagcgggtgagtgcggatatcgccccttgggggagttatttaaccttccaactgtggtcc
aatgcataa
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