Shewanella decolorationis: D0436_11910
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Entry
D0436_11910 CDS
T09167
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sdeo
Shewanella decolorationis
Brite
KEGG Orthology (KO) [BR:
sdeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdeo03019
]
D0436_11910 (hrpA)
Enzymes [BR:
sdeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
D0436_11910 (hrpA)
Messenger RNA biogenesis [BR:
sdeo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
D0436_11910 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
nSTAND3
ABC_tran
ResIII
nSTAND_NTPase5
WHD_HA2
SLFN-g3_helicase
PhoH
NACHT
T2SSE
TsaE
NTPase_1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QDZ91114
UniProt:
A0A5B8QXD7
LinkDB
All DBs
Position
2341225..2345106
Genome browser
AA seq
1293 aa
AA seq
DB search
MVLNSDKHPLSSDFLKQCFQSDASRIRRRLFKLNKEADSDKKTQELAKLAEQAQAAFEKV
EQRLKARPKIQYPDNLPVSGMREEIAKAISENQVVIIAGETGSGKTTQLPKICLELGLGS
RGFIGHTQPRRLAARSVATRVAEELQSPLGEVVGFKVRFADALKSESYIKLMTDGILLAE
LTSDRYLDQYDTIIIDEAHERSLNIDFILGYLKQILKKRPDLKIIITSATIDVERFSKHF
NNAPIIEVSGRTYPVETRYRPLVQDTEADLDQIEGIFAAVDELVAEGLGDILIFMNGERE
IRDTTEQLNRRNYRDTEILPLYARLSYGEQSKVFSSHTGRRIVLATNVAETSLTVPGIRY
VIDPGTARISRYSYRTKVQRLPIEPISQASANQRQGRCGRVGPGICIRLYDEADFNSRPA
FTDPEILRTNLASVILQMLAIGLGDIAAFPFIEPPDPRHIRDGFLLLEELQAVKQQKGNI
VLTPLGRQLSQIPVDPRLARMVVESHQLGCLQEVLVIAAGLSIQDPRERPMDKKQASDEA
HRRFADPHSDFVSWVNLWQHLKEQQKELSASQFRKKCRDEYLAYLRVREWQDLYTQLKQA
VHDLKWRLNDTPANYDALHRALLSGLLSHIGFKDNNNEYLGARNRKFFVFPGSPLAKKGP
KWIMAAELTETSKLFARCCAKIEPEWLEPLAAHLIKKNHLEPHFEAKQGSVIAFENQVLY
GLTVVHRRRVQYGPINPVEAREIFIRSALAEGQLQTKEAFFIANQKLLEDVEALEHKSRR
RDILVDEQVLMDFYEPRIPEGIYNAPKFFSWWKEARRTQPDLLDFNKSLLMQRSADHISA
LDFPDTWHKGNIRLQLSYHFDPAASDDGVSVHIPVALLNQIDDNDFDWLVAGMREEKCVA
LIKSLPKGLRRNFVPAPDYARACVQAMQPFSASLLEAMCKQLLRMSGTRVNPEDFDLTQM
PVHLQMNFKIEDDKGKLVAQGRVLDTLKAELQGVVAKAIRQVADKGIEKEALTEWSFGDL
PKQFEQRKGNYQVRAFPALIDNKDSVAIKLFDDEFEAQAAHRQGLRRLLLLNIPSPVKHL
QQALPNKAKLAMYFNPFGQVQILIDDIIAAAVQQLLDEKALDVRDAAQFDAAKDWVRQEL
NPTAEQIALKVEQILTLYQGIKKRTKGKISLDIAFAMSDIQSQLDQLVFKGFVEACGWNR
LADVARYLKAIEIRIDKLPVDPTRDRLHMQSITKVQEALAAQLAKVPRSQPTPAALIEAR
WMIEEYRVSCFAQALGTAYPISEKRILNHIQQA
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
ttggttttgaactctgacaaacatccgctatcgagcgactttctcaagcagtgctttcaa
agtgatgcctcgcggatccgccgccgtttatttaagctcaataaagaagccgattctgat
aagaaaacccaagagttagccaaacttgccgagcaggcgcaagcagcgttcgaaaaggtc
gagcagcgccttaaggcgcgcccgaaaatccaatatccagataatctgcccgttagcggc
atgcgcgaagagatcgctaaagccatcagtgaaaaccaagtggtgatcattgcgggtgaa
accggttcgggtaaaaccactcagctcccgaaaatctgtttagaactgggccttggtagt
cgcggctttattggtcatacccagccgcggcgattagcggcgcgtagcgtggcgacacgt
gttgctgaagaattacaaagtccgctcggcgaagtggtgggctttaaggtgcgttttgcc
gatgccttaaagagcgaatcctatattaagctgatgactgacgggattttactggcggag
ctcacctcggatcgctatttagatcaatacgatacaatcattatcgacgaggcgcacgag
cgcagcctcaacatcgattttatcttgggttacctcaagcaaattttgaaaaaacgcccc
gatcttaagatcatcatcacctcggcgactatcgatgttgagcgtttttctaagcatttc
aataatgcacctattatcgaagtttctggccggacgtatccggtggaaacccgttatcgc
ccgttggtgcaagataccgaagcggatctagaccaaatcgaagggatttttgctgccgtt
gacgaattagtcgccgaaggcttgggcgatattctgatctttatgaacggcgagcgcgaa
attcgtgataccaccgagcagctaaatcgtcgcaattaccgcgataccgagattttgccc
ttatatgctcgcctctcctacggcgagcagtccaaggtattcagcagccatactgggcgt
cgcatagtgcttgccactaacgtggcggaaacgtcgctcaccgtccctggtattcgttat
gttattgacccaggcacagcgcggatcagccgttacagttatcggactaaggtgcagcgc
ctgcccatcgagcccatttcacaggccagtgccaatcagcgtcaaggccgctgcggccgt
gttggcccgggtatttgtattcgcttatacgatgaggcggattttaacagtcgtcccgcg
tttaccgatcccgaaatcctacgcaccaacttagcctcggtgattttgcagatgctcgcc
atcggccttggcgatattgcggcgttcccctttattgagccgcccgatccgcgccatatt
cgcgatggcttcttactgcttgaggaattacaagccgttaagcagcagaagggcaatatt
gtgttaacgccgcttgggcgacagttatcgcagatcccggtggatccgcgtttagcgcgt
atggtggtggagagtcatcagctgggctgtttgcaggaagtgttagtgatcgccgcgggt
ctgtcgattcaagatccccgcgagcgtcccatggataaaaagcaggcgtccgatgaggcc
catcgccgttttgccgatccccattcagattttgtcagttgggtgaacctatggcagcac
ttaaaagagcagcaaaaggaattatccgccagccagttccgtaaaaaatgccgcgacgag
tacttagcctacctgcgtgtgcgcgaatggcaggatttatatactcagctaaaacaagcg
gttcacgatttaaagtggcgcttaaacgacactccagccaactacgatgcgctgcaccgt
gcgttgttatcgggtctgctgagccatatcggctttaaggacaataacaacgagtactta
ggcgcgcgcaatcgtaagttttttgtgttccctggttcaccgctggcgaaaaaaggcccg
aaatggatcatggcggcggagctgaccgaaacctctaagctgtttgcgcgctgctgcgcc
aaaattgaacccgagtggctcgagccgttagcggcgcatctgattaaaaagaatcaccta
gagccgcattttgaggcaaaacagggcagtgtcattgcctttgaaaaccaagtgctttac
ggtttgaccgtggtgcatcgccgccgcgtgcaatacgggccgattaatcctgttgaagcg
cgggagatctttatccgtagcgcgctcgccgaagggcaattacagaccaaagaagccttc
tttatcgctaaccaaaagttattggaggatgtcgaagcgctcgagcacaagtcccgtcgc
cgcgatattttggttgatgaacaagtgttgatggacttttacgagccgcgcattcccgaa
gggatctataacgcgcctaagttctttagctggtggaaagaagcgcgccgaactcaaccc
gatttactcgattttaataagtcactgctgatgcagcgcagtgccgatcatatctcggcg
cttgatttccccgacacttggcataagggcaatattcgcctacaactcagttatcacttc
gaccccgctgcgagtgatgatggggtatccgtgcatattcctgtggcgttactcaatcaa
atcgatgataacgatttcgattggttagtggcggggatgcgtgaggagaaatgtgtcgcg
ctgattaagtctttacctaaggggctgcgacgtaactttgtgcctgcgcccgattatgcc
cgtgcctgcgtgcaggcgatgcagccctttagcgccagtttactggaggccatgtgcaaa
cagctgctgcgtatgagtggtacacgcgtcaatcccgaagattttgatttaacgcagatg
ccagtgcatttgcagatgaattttaagattgaggacgataagggcaagttagtggcacag
gggcgggtacttgataccctaaaggccgagttacagggcgtggtcgctaaggcgattcgt
caagtggcggataaggggattgaaaaggaagcgctcaccgagtggtcctttggcgactta
cctaagcaatttgagcagcgtaagggtaactatcaagtgcgggcattccccgcattgatt
gacaacaaagactcagttgccatcaaattatttgatgatgaatttgaggcacaggcggcg
caccgtcaggggcttagacgcttgttgttactaaacatcccttcaccagtaaaacacctg
caacaggcactgcccaacaaggcaaaactggcgatgtatttcaatccatttggccaagtg
caaattctgattgatgatatcattgccgcagccgtgcagcagttgctcgatgaaaaggcg
ctggatgtgcgcgatgctgcgcagtttgatgcggccaaggattgggtgcgccaagagcta
aatcctaccgctgagcaaattgccctaaaagtggagcagattttgacgctctaccaaggc
attaaaaaacggactaagggtaaaattagcttagacatcgcttttgcgatgagtgatatt
caaagtcaattggaccaattagtctttaaaggatttgtcgaagcctgtggttggaatcgc
ttagctgatgtagcgcgctacttaaaagcgattgaaatccggatcgataaattacctgta
gacccgacccgtgaccgcttgcatatgcagagtatcactaaagtgcaggaggccttagca
gcgcaacttgctaaggtgccacgctcgcagcctactccagcggcactgatagaagcgcgc
tggatgattgaagagtaccgggtgtcatgctttgcccaagcgcttggtactgcctatcct
atctcggaaaagcgtatcttaaatcatattcaacaagcctaa
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