Shewanella decolorationis: D0436_13915
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Entry
D0436_13915 CDS
T09167
Name
(GenBank) SMC family ATPase
KO
K03546
DNA repair protein SbcC/Rad50
Organism
sdeo
Shewanella decolorationis
Brite
KEGG Orthology (KO) [BR:
sdeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdeo03400
]
D0436_13915
DNA repair and recombination proteins [BR:
sdeo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
D0436_13915
Archaeal homologous recombinant proteins
D0436_13915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
cobW
Motif
Other DBs
NCBI-ProteinID:
QDZ91464
UniProt:
A0A5B8QYD6
LinkDB
All DBs
Position
complement(3068963..3072019)
Genome browser
AA seq
1018 aa
AA seq
DB search
MKPLTLSMSAFGPFASTQTIDFTELGENPLFLINGPTGAGKTTLLDGICFALYGKTTGNE
REGSQMRCDMADDSLLTEVTFSFQLGSTGYRIRRVPEQERLKKSGDGSTVQKSEAQLYKI
ATDGSETLIVASKVSDATAEIEALTGLDVEQFRQVMVLPQGKFRELLMADSKAREQIFSQ
LFQTHIYKRIEDTLKAKAADIAALVKEQRARRAGILQTVAFTSDDELAAEFSRIEPEFAA
ATAAKEQSVAAHLAALKQRDSAQQLFAEFTRLEELQAELSRLNEQQGNIATQTARLDIAK
QALRIKPLLDNALSREQEASLAATQRDSAQSTLDAAKLALAQAETVAQEIIPLEHKLREV
EQQHSHLSALVPQLAEFASLEQALAQAKEILQNTKLQGQESKNTLATLVEQRSHCEAQLP
ALQQQSEQQLATAQALQQHRHMLEQFKQWQQICVKVAHTQGLLEEVGSQGKALNTQYQEA
STAYKSLQLKWFQGQAAILARELKPHEPCPVCGSSAHPQPAISHEDLPTELQLQAAQDAE
ALALDNLNKARAEYRGLQKQLETQQQQANELAAALGDKAELSLESHRQTLDELTLQSKQA
DAAAQALQRLQQQIKTLQQQESTLTQQLELERERYREQEGKVERLSGQFAEKALRIPEEY
RTLEVLTQAIANNQQQLEQIKRQIDALRTAQQQATQQSVAAQTALSAAIERCNATADLQA
QAQQALLKALDNAAFTDRDALREALLTDEQMQVLAEGIETYHRQCALNQSQLTELKTKLS
ESTSPDLDALEALLTERLAQLKTAEEVWSQLNTRLMLLNNTQTQLAIVDQKAKSLEDEYA
VIGTLADVANGNTGNKISLQRFVLSVLLDDVLLAATQRLHLMSKGRYRLLRKEDRAKGNK
ASGLELEVEDAYTSKVRPVATLSGGESFMAALSMALGLSDVVQAYAGGIKLDTLFIDEGF
GSLDQDSLELAIRTLMDLQSAGRMIGVISHVSEMKEQIGTRIDILKTSHGSEIKVILP
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgaagccactcacgctatcaatgtcggcctttggcccctttgcctcgactcaaaccatt
gattttaccgaactgggggagaaccccttattcctgatcaatgggccaactggcgcgggc
aaaaccacgctgctcgacggaatttgttttgcactttacggcaaaaccacaggtaacgag
cgtgaagggagccagatgcgctgcgatatggccgatgatagcttgctcaccgaggtgact
tttagttttcaattaggcagtacgggttatcgtattcgccgcgtccccgagcaggaaaga
ttaaagaaaagcggtgatggctcaacggtacaaaagagtgaagcacagctgtataagatt
gccactgacggcagtgaaacccttatcgtcgccagtaaagtgtcagatgccacggccgaa
atcgaggccctaactggcctagatgtggagcagttccgccaagtgatggtgctcccgcag
gggaaatttcgtgaattgctgatggccgattctaaggcgcgtgagcaaatttttagccag
ctatttcaaactcatatttataaacgcatcgaagataccctaaaggctaaggcggcggat
attgctgccttagtgaaagagcagcgcgctcgccgcgctggtatcttgcaaacggtagca
tttacatccgatgacgaacttgctgcagagtttagccgcattgaacctgagtttgcggcg
gcgacggcggcaaaggagcagagcgttgcggcgcatttagcggcattaaaacagcgtgat
agtgcgcagcaactctttgctgaatttactcgattagaggaattgcaggctgagttatct
cgcctgaatgagcaacaagggaacattgcaacgcagacggcacggcttgacatcgccaag
caagcactgcgtataaaacccttattagataacgccttgtcgcgggagcaagaagcgagt
ctcgccgccactcagcgcgatagcgcgcagtcgacactcgatgccgctaagcttgcactc
gctcaagctgaaaccgtggcgcaggaaatcattcccctcgaacataagctgcgtgaggtt
gagcagcaacatagtcatctcagtgcgttagtgccgcagctggctgagtttgccagcctt
gaacaagctttagcgcaagcaaaagagatactacaaaacaccaaattgcaggggcaggag
agtaaaaatacgcttgcaacgctagtggagcagcgcagccattgtgaggctcaactgcca
gccttgcagcagcaaagcgagcagcaacttgccactgcgcaggcgctgcagcaacaccgt
catatgctcgagcagtttaagcagtggcagcagatctgcgttaaagtcgcgcacactcaa
ggattgcttgaggaggttggctcacaaggaaaagcgcttaatacccaatatcaagaagcc
tcaacggcttataagtctttgcaactgaagtggttccaaggtcaggcagccattttagct
agagagctaaaaccccatgagccatgcccagtttgtggcagttcggcccatccccaaccc
gcgatcagccatgaggatttaccaacggaactgcaattgcaggctgcgcaggatgccgag
gccttggcgctcgataatctcaataaagcgcgggctgaatatcgcgggctgcaaaaacaa
ttagaaacacagcaacagcaggcgaatgagctggcagccgcccttggcgataaggctgag
ttgtcgcttgaatcccatcgccaaacgttagacgaactgacactacaatcgaaacaggcg
gacgctgcggcgcaagcgctacagcggttacagcaacagattaaaaccttgcagcaacaa
gagtcgacgttgacgcagcaattagaacttgagcgtgagcgttaccgtgaacaagaaggc
aaagtcgagcggttatcgggtcaatttgcggaaaaagcgctgaggatcccagaagaatac
cgaacactggaggtattgactcaagcgattgcgaataaccagcagcaactcgagcagata
aaacgtcagattgatgcactgagaaccgcgcagcagcaggcaacgcagcagagtgtggcg
gcgcaaacggcattatcggcggcaatagagcgttgtaatgctaccgcagatctgcaggcg
caagcacagcaggcgctacttaaggcgcttgataacgcagcctttaccgatagagatgca
ttgcgcgaggccttattaacggatgagcaaatgcaggtgctggctgagggcatagagacc
tatcataggcagtgcgccctaaatcagtcgcaattgactgagcttaaaaccaagttgagc
gagtcgacatcacccgatcttgatgccttagaggccttgctcacggagcgactcgcacag
cttaaaacggcggaagaggtatggagtcaactcaacactcggctcatgttgctgaataat
acccaaactcagttggcgattgtcgatcaaaaggccaaatccctcgaggatgaatacgct
gtgattggcaccttagccgatgttgccaacggtaatacgggcaacaaaatttccctgcaa
cgctttgtactcagcgtattgctcgacgatgtgttgcttgcggcaacgcagaggctgcat
ttaatgagtaaaggtcgctaccgattattgcgcaaggaagacagagctaagggcaataag
gcctcagggttagagcttgaagtcgaggatgcctacacctctaaagtgcgtcccgtggcg
accttaagtggtggtgagagttttatggcggccttgtcgatggccctgggcttatcggat
gtggttcaagcctacgcaggggggataaaactcgataccttatttattgatgagggcttt
ggcagcctagatcaggactcactcgaacttgccattcgaaccctgatggacttgcaatcg
gcgggtaggatgattggggtgatttcccatgtatctgaaatgaaagagcagataggtacc
cgaattgacatcttgaaaacctcccatgggagtgaaatcaaggtgattttgccttag
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