Shewanella decolorationis: D0436_14915
Help
Entry
D0436_14915 CDS
T09167
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sdeo
Shewanella decolorationis
Pathway
sdeo03030
DNA replication
sdeo03430
Mismatch repair
sdeo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sdeo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D0436_14915 (dnaE)
03430 Mismatch repair
D0436_14915 (dnaE)
03440 Homologous recombination
D0436_14915 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdeo03032
]
D0436_14915 (dnaE)
03400 DNA repair and recombination proteins [BR:
sdeo03400
]
D0436_14915 (dnaE)
Enzymes [BR:
sdeo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
D0436_14915 (dnaE)
DNA replication proteins [BR:
sdeo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
D0436_14915 (dnaE)
DNA repair and recombination proteins [BR:
sdeo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
D0436_14915 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
DUF655
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
QDZ91640
UniProt:
A0A5B8QY99
LinkDB
All DBs
Position
1777171..1780647
Genome browser
AA seq
1158 aa
AA seq
DB search
MSDPRFVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHGA
GIKPIIGADFWMQVPGFDGEFCALTIIAMNNEGYQNLTQIISQAYLRGHVQGRVVIDQEW
LVTYNEGILLLSGGREGDVGKALLKGNNTQVESLCEFYQQHFEGRYYLELLRTGRPDEER
YLHMAVGLAQEKGIPVVATNQVVFLKPEDFEAHEIRVAIHDGFTLADPRRPKKYSEQQYL
RSEEEMCELFADIPAALENTVEIAKRCNVTIRLNEYFLPNFPTGDMSIEDYLVDRSKKGL
EERLAFLFPDPAVRAERRGEYDERLDVELKVINQMGFPGYFLIVMEFIQWGKDNGIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE
LYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPEPGMTLAKAFEVEPA
LQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDAEGKNPVTQ
FDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRPPVRIEAIPLDDPASFRLL
QRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGREE
VSYPDSQYQHESLKGLLSPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRGTFKEGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPS
QFMAAVMSADMDNTDKIVTLVDECERMGLTIIPPDVNKGLFKFTVDDDLRIVYGIGAIKG
VGEGPVESILEARKDGPFKDLFDFCARIDLKKLNKRVIEKLICAGALDALGPHRASMMAT
LPEAISAADQHAKAEAIGQHDMFGLLNSDPEDSKQQFVECTPWPDKIWLEGERETLGLYL
TGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVVATRVMLTKRGSKMGLLTLDDK
SARLEVMLFTEAFEKFNHLLEKDRILICEGEVSFDDFAGGNRMTARNIIDISEARSHFAS
ALEIDLDASQLTPSVLESIEQSISPWRNGAVPVVINYSQAQAKGQFRLAENWRVNPSDEL
VFALESLLGPNKVRILFP
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatcctcgttttgtgcatcttcgtgtccacagtgacttctctatgtccgatggt
gtggctaaggtcaaacccatcctcgcccaagttgaggcgaagggcatggctgcggtggcc
ttaacggatcaaaacaacctctgcggtctggttaagttttatggcggctgtcacggggcg
gggattaagccaattatcggtgcggatttttggatgcaagtgccgggatttgatggcgag
ttttgtgctttaaccattattgcgatgaataatgagggttatcaaaatctcactcaaatc
atcagccaagcctatttacgtggccatgttcaagggcgcgtggtgattgaccaagagtgg
cttgtcacctacaacgaaggcattttactgctgtctggcggtcgagaaggagacgtgggt
aaggcgctgcttaagggcaacaatacccaagtagaatccttatgcgagttttatcagcag
cattttgagggccgttattacctcgagttattgcgcacggggcgccctgatgaggagcgt
tacctgcacatggcggtgggactggcacaggaaaagggtattcctgtggtggctaccaat
caggtggtgtttttaaaacccgaagactttgaggcccatgagatccgcgttgcgattcac
gatggttttacgctcgccgatccccgccgtcctaaaaaatacagcgagcagcagtacctt
cgcagtgaagaggaaatgtgcgagctgtttgccgacattcccgctgcgctcgaaaacacg
gttgaaatcgccaagcgctgcaacgttacgattcgcttaaacgaatactttttaccgaac
ttccctactggggatatgtcgattgaggattatttggttgatcgctcaaagaaggggctc
gaagaacgtttagcattcttatttcccgatccggctgtgcgtgctgagcgccgcggtgaa
tatgacgagcgtctcgatgtggagctcaaggttatcaaccagatgggcttccccggttac
ttccttatcgtaatggagtttatccaatggggtaaggataatggtatccccgtggggcct
ggacgtggttctggcgcaggatcgcttgtggcctatgctttaaaaattaccgacttagac
cccctcgaattcgatctactgttcgaacgttttttgaacccagagcgggtgtcgatgcct
gacttcgacgtcgacttctgtatggatagacgcgatgaggtcattgaccatgtggccgag
ctctacggccgtgaagcagtatcgcaaattattacctttggtaccatggcggccaaggcg
gttatccgtgacgtaggccgtgtgctcggccatccctatggctttgtggaccgcatttct
aagttgattccgccagagcctggcatgacgctcgccaaggcctttgaggtcgagcctgcg
ttgcaggagtcctacgatgccgatgaggatgtgaaagatcttatcgacatgtgccgcaaa
ctcgagggggtgacccgtaacgccggtaagcacgcggggggcgtggtgattgcgcccacc
aagatcaccgacttctcgccgctttactgcgatgccgaagggaaaaacccggtaacccag
ttcgataagaacgacgtggaaaccgctggcttagtaaaattcgacttcttagggttaaga
accctcaccatcgtcgactgggcgctggaaatgatcaacaaggtggaggttaaaaacggc
cgtccaccggtgaggattgaggcgattcccctagatgaccccgcgtcgttccgcttgctg
caacgctatgaaaccaccgcggtattccagcttgaatcccgcggtatgaaggatttgatt
aagcgtctgcaacccgactgcttcgaagatatgattgcactcgttgcactgttccgccct
ggcccactgcaatcgggcatggtggataactttatcgagcgtaagcatggccgtgaggag
gtttcttatcccgactcgcagtaccagcacgaatctctaaaaggattattgtcccccacc
tacggcattattttgtaccaagagcaggtgatgcagattgcgcaggtactatcgggttat
accttaggcggcgctgacatgcttcgccgcgctatgggtaagaaaaagcctgaggagatg
gccaaacagcgcggtacctttaaagaaggagcgattaagaacggcgtcgatggcgagttg
gcgatgaaaatcttcgacttagtggaaaagtttgcgggctacggctttaacaaatctcac
tccgccgcgtacgcccttgtgtcctatcaaactctgtggctcaagactcacttcccgtcg
cagtttatggccgcggtaatgtccgccgatatggacaacacagacaaaatcgtcacccta
gtggacgaatgtgagcgcatgggactcaccattattccgccggatgtaaacaaaggtctg
tttaagtttaccgtcgatgatgatctgcgcatcgtttacggcatcggcgcgatcaagggc
gtgggtgaggggccagttgaatcaattttagaggcgcgtaaggatggcccatttaaagat
ttattcgacttttgcgcccgtatcgatcttaaaaagcttaacaagcgggtgattgaaaag
cttatctgcgcgggtgccttagatgcgctagggccgcaccgcgcctctatgatggcaacg
ttaccagaggcgataagcgccgccgatcagcacgctaaggccgaggccatcggccagcat
gatatgtttggtctgctcaatagcgacccagaggacagcaagcagcagtttgtcgaatgc
actccgtggcccgataaaatttggctcgaaggggagcgtgagaccttaggtctatattta
actggtcacccgattaatcaataccttaaagagcttaagcattacacttctgggcgctta
aaggacgtgcacccaaccgatcgcggcaaaaccgttaaggcggcaggccttgtggtggca
acccgggtgatgctcactaagcgtggctcgaaaatgggtctgctcacgctagatgacaag
agtgcacgcctcgaggtgatgctctttaccgaagcctttgagaagtttaaccatctgctc
gagaaggacaggatcctgatctgcgaaggtgaagtaagcttcgatgattttgccggtggc
aaccgcatgacggcgcgtaatattatcgatatcagcgaggcgcgcagccactttgccagc
gccttagaaatcgatttagacgcctcgcagttaacgccaagcgtgctagaaagcatcgag
cagtcaataagcccatggcgtaatggtgccgtgcccgtagtgattaactacagtcaagcg
caggccaagggccaatttaggttggcggaaaattggcgggtcaaccccagcgatgaattg
gtgtttgcccttgagagcctgcttggacctaataaggtgcggatcctgtttccctaa
DBGET
integrated database retrieval system
