Shewanella decolorationis: D0436_16695
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Entry
D0436_16695 CDS
T09167
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
sdeo
Shewanella decolorationis
Brite
KEGG Orthology (KO) [BR:
sdeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sdeo03009
]
D0436_16695 (rlmD)
Enzymes [BR:
sdeo01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
D0436_16695 (rlmD)
Ribosome biogenesis [BR:
sdeo03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
D0436_16695 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
PCMT
Methyltransf_11
TRM5-TYW2_MTfase
Methyltransf_15
MTS
Methyltransf_23
PrmA
Methyltransf_12
Methyltransf_4
RrnaAD
Methyltr_RsmB-F
CMAS
UPF0020
Ubie_methyltran
N6_N4_Mtase
Motif
Other DBs
NCBI-ProteinID:
QDZ91961
UniProt:
A0A5B8R294
LinkDB
All DBs
Position
complement(3639316..3640665)
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AA seq
449 aa
AA seq
DB search
MAQFFKAKPNSSKQLSAKQSFSVHQLDHLGAGIAQHQGKVVFIPGALPSETVQAQLTEQK
KNYARAKLIKVETPSAERVTPLCPHYQTCGGCDLQHMSLAGQREHKSAALVDIMAKFAGA
EGNSVPALTGEGWHYRRRARLATLFDKNTKQLSLGFRASSSSQVVPIDSCLVLAKPLADL
IAPFAKLLNQLAAKSSLGHLELIDADNGHFAVIRITKSLNDKDMAKLTQFAEQHQIHICL
QDNNGEFHGVNGTLLLPVYQLLDDNADAKPVSLTFTPGNFVQVNAQINKAMVAQALDWLA
PQPGERILDLFCGMGNFSLPLAKLGAEVIGVEGVPEMVSQARENAAANGLSNLTFYHGDL
SADLSCEPWMGKIDKLLLDPARAGAFESLQWLKKMKPRQVVYVSCNPASLARDSAVLLER
GYKLQKLGLIDMFPQTHHIEAMALFELAK
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggcacaattttttaaagcaaaaccaaatagttccaagcaattgtccgcgaagcaatcc
tttagcgtgcaccagctggatcatctaggggcaggtatagcacaacatcagggaaaagtc
gtatttatccccggcgccttgcccagtgaaaccgtgcaggcgcagctgaccgaacaaaag
aaaaactatgctcgagccaagctaattaaagttgagacgccgagcgctgagcgagtcacg
ccgctatgcccacattaccaaacttgtggcggctgcgatttacagcatatgtcattagct
ggccagcgcgagcataagtccgcggctttggttgatattatggccaaatttgctggcgcc
gaaggcaactcagtgcctgcattgacgggtgaaggttggcactatcgtcgccgcgcccgc
cttgcgaccctatttgataaaaataccaagcagttgagcctagggtttcgtgcctcgagc
agcagccaagtggtgcctattgatagctgtttagtcttggcgaaacccttagcggattta
atcgcaccctttgctaagttgcttaatcagctggcggccaaatcgagccttgggcactta
gagttaattgatgccgacaacggccattttgcggtaattcggatcactaaatccttaaac
gataaggacatggcaaagcttacgcagtttgccgagcagcatcaaatccatatttgtttg
caagacaacaacggcgagttccatggagtgaatggcacgttgttattgcccgtttaccag
ttgctcgatgataacgccgatgcaaagcctgtgagcttaacatttacccctggcaacttt
gtgcaagtgaatgcgcaaattaacaaggccatggtggcgcaggcgttagactggttagca
ccacagccgggtgagcgcattctcgatctcttctgcggtatggggaacttcagtttgcct
ttagctaaactgggcgctgaagtgattggggttgaaggggtgccagaaatggtcagccaa
gcccgcgaaaacgcggcggcgaatggcttaagcaatttaaccttttaccatggcgactta
agtgccgatttatcctgcgagccttggatgggcaagattgataagttgctactcgaccca
gcgcgtgcgggggcgtttgagagtttgcaatggcttaagaagatgaaaccccgccaagta
gtctatgtgtcttgtaatccggcgagcttggcccgcgacagtgcggtgttgctcgaacgt
ggttacaagttacaaaagttaggcttaatcgatatgttcccgcagacacatcatatcgaa
gccatggcgttgtttgagcttgcaaaataa
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