Shewanella decolorationis: D0436_18050
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Entry
D0436_18050 CDS
T09167
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
sdeo
Shewanella decolorationis
Brite
KEGG Orthology (KO) [BR:
sdeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sdeo03009
]
D0436_18050 (srmB)
Enzymes [BR:
sdeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D0436_18050 (srmB)
Ribosome biogenesis [BR:
sdeo03009
]
Prokaryotic type
rRNA helicases
D0436_18050 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AASDHPPT_N
PhoH
AAA_11
NAT10_TcmA_helicase
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QDZ92205
UniProt:
A0A5B8R0Q5
LinkDB
All DBs
Position
3949618..3950880
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AA seq
420 aa
AA seq
DB search
MQFEDFQLDPSLLESLKAMGHLSPTTIQQETLPHALEQRDILARAPTGTGKTASFLLPAL
QHLIDFPRRYSGHARILILTPTRELASQIHRYACHLATGQGLNIAIITGGVPYGPQEEAL
KDNIDILVATPGRLMEYLDKGKFSAESVDILIIDEADRMLDMGFSAVVKAIALEAQGRKQ
NMLFSATLEGSGVIRFAREVLNDPIEIDVDAPRKEKAKIHQWIHLADDKEHKFALLCHLL
KQEEVKRAIVFVKTRDVVSSLEGQLLKAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLL
ATDVAARGIDIDDITHVINFDMPRSADSYIHRIGRTGRAGAKGTAISLAEAHDMRIVGKI
ERYIEQPLKRRIIEELRPKHKEARVPTKKKAKVKAKEAAKRTNKKEAAKKASKIARKKQA
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttgaagattttcagcttgaccctagcttattagagtcacttaaagccatgggg
cacctgtcgcccaccactatccaacaagaaaccctgccacacgccctcgagcagcgggat
attttagcgcgcgccccgacgggtacaggtaaaactgccagtttcttattgccagcgctg
cagcacttaatcgactttccccgtcgttattcgggtcatgcgcggattttgatcctcacg
cctacccgtgagttagccagccaaattcaccgttatgcctgccacttagccacaggccaa
gggctgaatatcgccattatcaccggcggtgtgccctatggtccgcaggaagaagcccta
aaagacaatatcgatattctggtggcgacccctggccgtctgatggaatatttagataaa
ggcaaattcagtgcggaatcggtcgacatactgatcatcgacgaagccgaccgcatgctg
gatatgggtttctccgccgtagttaaagctatcgccctcgaagcccaaggtcgtaagcaa
aatatgctgttttcggccaccctcgaaggcagtggcgttatccgttttgcccgtgaagta
cttaacgaccctatcgaaatcgatgtcgacgcgccgcgtaaagagaaagccaagatccac
caatggatccaccttgccgacgataaagaacataagtttgccctgctgtgccatctactc
aagcaggaagaggttaaacgcgccatcgtattcgtaaagactcgcgatgtggtatctagc
ctcgaaggtcagttgcttaaagctggtatcccctgcgcctttatgcgtggcgatatggaa
cagaagaaacgtttccaagccttaagtcgctttaccaaaggtgaagtgaacgtgttactc
gcgactgatgtggccgcccgcggtatcgatatcgatgatatcacccatgtgattaacttc
gacatgccgcgttctgccgatagttatatccaccgcattggtcgtactggccgagcggga
gcaaaaggaacggcaatttcattggccgaagcccacgatatgcggattgtcggtaagatt
gagcgttatatcgaacaaccgcttaagcgccgaatcattgaggaactgcgccctaaacat
aaagaggcgcgagtaccaaccaagaaaaaggccaaagttaaagccaaagaagcggcaaag
cggaccaacaaaaaagaggctgctaaaaaagccagtaaaattgcccgcaagaagcaagct
taa
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