Shewanella decolorationis: D0436_18375
Help
Entry
D0436_18375 CDS
T09167
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
sdeo
Shewanella decolorationis
Brite
KEGG Orthology (KO) [BR:
sdeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sdeo03009
]
D0436_18375 (dbpA)
Enzymes [BR:
sdeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
D0436_18375 (dbpA)
Ribosome biogenesis [BR:
sdeo03009
]
Prokaryotic type
rRNA helicases
D0436_18375 (dbpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
AAA_30
U-box
Helicase_C_2
AAA_19
CMS1
AAA_22
YlmH_RBD
Motif
Other DBs
NCBI-ProteinID:
QDZ92263
UniProt:
A0A5B8QZZ6
LinkDB
All DBs
Position
complement(4024228..4025604)
Genome browser
AA seq
458 aa
AA seq
DB search
MAFSTLKLKPELLENLTTMGYHEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGLGLL
NKLDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGSLEHG
AHIIVGTPGRIVDHLERNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRERQTLL
FSATFPEQIQSIAKQIMYDPVMVKVAVTHEKSTIEQHFYHLDDDKARMQALQLLLLDRKP
ESAVVFCNTKRETQKVADELSDAGFSVIALHGDLEQRDRDETLLQFANKSACVLVATDVA
ARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAFTFFDDQDGYKIALLEEYLE
RDIQSEALPSLSLLGTAPNAPTMITLQIDGGKKEKLRPGDILGALTGENGIEGSQVGKIL
VTDYRAYVAVNRKVAKKALSKITSGRIKGKSYRAWLMK
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atggctttctcgactcttaagctaaaacccgaactgcttgagaaccttaccactatgggc
tatcacgaaatgacgccgattcaggcgcagagtctgccagccattttagcgggtgaggat
gtgattggtcagggcaagacgggttcgggtaaaacggcggctttcggtttaggtctgctg
aacaaattagatgtgaagcgttttcgcattcaaaccttagtgctgtgtccaacccgcgaa
ctggctgaccaagtggcgcaggagatccgcacactggcgcgtggtattcacaacgtaaaa
gtgctcactctttgcggtggcgtgcccatggggccgcaaatcggttcgctcgagcatggc
gcccacattatcgtcggtacgccagggcggattgtcgatcacttagagcgtaaccgttta
gacctaagcaacctgaatatgctcgtgttggacgaagctgaccgcatgctggaaatgggc
ttccaaccccagctcgatgcgattatcgagcagtcgccacgcgagcgccaaacgttgctg
tttagtgcaaccttccccgaacagattcagtcgattgctaagcaaattatgtacgaccct
gtgatggtgaaagtggccgtgacccacgaaaagagcaccatcgagcagcatttctaccac
ttggatgacgacaaggcgcgcatgcaggcactgcaattattgctgctggatcgtaagccc
gagagcgctgtggtgttttgtaataccaagcgcgaaacccaaaaagtggccgatgaactc
agcgatgcaggctttagcgttatcgccctacatggggatttagagcagcgtgaccgggat
gaaaccctgctgcaatttgccaacaagagtgcctgtgtgttggtggcaaccgacgtggct
gcccgtggtttagatatcgacgcgctggatgcggtatttaactaccacgtggcctatgat
accgaagtgcatattcaccgtattggccgtaccggccgtgcaggcagtaagggcgcggct
tttaccttctttgacgatcaagatggctacaaaattgcgttattagaagagtatttagag
cgagatattcagagcgaagccttgccatcattaagtttgctgggcacagcgcccaatgca
ccaaccatgatcaccctgcaaatcgatggcggtaaaaaagaaaagcttcgcccaggcgat
atcctcggggccctcactggggagaatggtatcgaaggctcgcaggtcggcaaaatcctt
gtgaccgattatcgcgcctatgtggcggtgaatcgcaaagtcgctaaaaaggcgctgagc
aaaatcaccagcggccgcattaagggtaagtcttaccgcgcgtggttaatgaaataa
DBGET
integrated database retrieval system
