Shewanella decolorationis: D0436_19065
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Entry
D0436_19065 CDS
T09167
Name
(GenBank) LysM peptidoglycan-binding domain-containing protein
KO
K08307
peptidoglycan lytic transglycosylase D [EC:
4.2.2.29
]
Organism
sdeo
Shewanella decolorationis
Brite
KEGG Orthology (KO) [BR:
sdeo00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
sdeo01011
]
D0436_19065
Enzymes [BR:
sdeo01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
D0436_19065
Peptidoglycan biosynthesis and degradation proteins [BR:
sdeo01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
D0436_19065
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LysM
SLT
LysM3_LYK4_5
LysM_OapA
LysM1_NFP_LYK
DUF1989
DUF6491
Motif
Other DBs
NCBI-ProteinID:
QDZ92384
UniProt:
A0A5B8R0Y0
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All DBs
Position
4177146..4178570
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AA seq
474 aa
AA seq
DB search
MRKTFRQPSALAALVVAILTAQLSGCATTSAQTSPTEYAAALPEAEGNSEDTAQPQHVET
NIIDERYTDVWEKIQHARTIDVHDDAEVRKQRNFFDDKQKFMTQVTQRAEPFLYYIVSQL
EARNMPLELALLPIVESGYNPLAQANGPAGLWQMIPATGRNFGLTINSAYDGRKDALAST
DAVLDYLQHLHDTLGNDWINAVAGYNSGELVIKAAIDRNKAKGKPTDFWSLNIPARQVQT
VPKWLAFIQIIRAPSHYNLKVMPIANRPFLERLPAPNGVEISQIANAAGLTKAEFKTYNP
GYRQSVIPSKGKYQIALPIENIGQYQENQHKLYAQKRYDSQSYIVKSGDSLGTIAAKFDI
SVKELKQVNNLSSDRIKIGQELTLLTPMNSEDNALTETPKQSKAQTTSQSAKTKASSKTA
DKPAAKASTYKVKSGDSLDKIARKNKVKLADLMKWNQLNAKSIIKPGQELKLSE
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgcggaaaacctttcgccaacccagtgcattagctgcgctcgtggtcgccatcttgaca
gctcagctaagcggctgcgcaaccacttcggcgcaaacttcaccaacggaatacgctgca
gccttgcctgaagccgaaggcaatagtgaagatacagcacaacctcagcatgttgaaacg
aacattatcgacgagcgctacaccgatgtgtgggagaaaatccaacacgcgcgcactatt
gatgtacatgacgatgccgaagtacgcaaacaacgtaactttttcgatgataagcaaaag
tttatgactcaggtgacccagcgcgccgagccttttttatactatatagtcagccagctc
gaagcccgtaatatgccgcttgaactggcactcctgccaattgtagagagtggttataac
ccgcttgcccaggcaaatggccccgctggactatggcaaatgatccctgccacgggacga
aactttggcctaactatcaactcagcctacgatggccgtaaagatgcactcgcctcaacc
gatgccgtactcgactacctacaacacttgcacgacaccttaggtaacgactggatcaac
gcggttgcaggctataacagtggcgagctagtgatcaaagccgctatcgatagaaacaaa
gctaagggcaaacccacggatttttggtcgctgaatattccagctcgccaagtacaaacc
gtgcctaagtggctcgcctttattcaaattatccgcgcgcctagccattacaatctcaag
gtgatgccgattgccaaccgtccatttttggagcgtttacccgcacccaatggcgttgaa
ataagccaaatcgccaatgcagcagggcttactaaagcggagtttaaaacctataaccca
ggttatcgccaaagcgtgatccccagtaaaggcaaataccaaatcgccctgccgattgaa
aacattggtcagtatcaagagaatcagcataagctgtacgcgcaaaaacgttacgacagc
cagagctatattgtgaaatccggcgatagcctaggcacaattgccgcgaaatttgacatt
tcagtcaaagagttaaagcaggtaaacaacctcagctccgatagaattaaaatcggccaa
gagttaaccctgttaacgccaatgaacagcgaagataacgccttgaccgaaacgccaaaa
cagagcaaagctcaaacaacgtctcaatcggcaaagactaaagccagcagtaaaaccgca
gataagccagcggcgaaagccagcacttacaaggtgaagtccggtgactcgttagataaa
atcgcgcgtaaaaacaaagtgaaactcgcggatttaatgaagtggaaccagctgaatgcc
aagagcattattaagcctggccaagagctaaaactgtcggaataa
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