KEGG   Shewanella decolorationis: D0436_20300
Entry
D0436_20300       CDS       T09167                                 
Symbol
hsdR
Name
(GenBank) type I restriction-modification system endonuclease
  KO
K01153  type I restriction enzyme, R subunit [EC:3.1.21.3]
Organism
sdeo  Shewanella decolorationis
Brite
KEGG Orthology (KO) [BR:sdeo00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:sdeo02048]
    D0436_20300 (hsdR)
Enzymes [BR:sdeo01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.3  type I site-specific deoxyribonuclease
     D0436_20300 (hsdR)
Prokaryotic defense system [BR:sdeo02048]
 Restriction and modification system (R-M system)
  Type I R-M system
   D0436_20300 (hsdR)
SSDB
Motif
Pfam: ResIII EcoEI_R_C SWI2_SNF2 DEAD Helicase_C HSDR_N DUF4145 AAA_19 DUF4041 zf_Hakai
Other DBs
NCBI-ProteinID: QDZ92615
UniProt: A0A5B8R1P2
LinkDB
Position
complement(568835..572251)
AA seq 1138 aa
MGSNISNFDFLKHHDELLLRLAQTAEWCFIPDPNTTLLKMRQLGEELAKNIAARVGVACG
QGINQVDLLRSLDYSLKLEQRIKDSFHTIRKLGNAANHDITSNSHRDALQSLQIGHALSI
WYHQLYGGDAAKGFKPTPFVKPKDPSEDVRILEEKMLELERQQQRTSERLAVAESLKRLE
QEKMQAELKRAEQMQAESKIWEQIATEQEAKLNEYKAQMAATNLELYTAFQAKDHQAQQQ
EIKRVEKLPFYLDEAETRIIIDKQLNEAGWKADTTNLKFSKGARPVENENRAIAEWPTSS
GPADYVLFMGLTPVAVVEAKKTAKNVYSSIDQAKRYAKGLETKNAFTIETCWRDFKVPLT
FATNGRPYLKQLEQESGIWFLDVRDNSNRRKALKGWYSPTEIKLLLKQTPEQAEQKLDAM
AFDYDLKLRDYQINAIKAVEQSIKDGKDRALVAMATGTGKTKTCIALVYRLLKSERFRRI
LFLVDRSALGEQATNDFKEVRLEHLQTFADTFDLMGLKDIKPEDSTKVHIATVQGLVQRI
LYPSDNDTKPGVGQYDCIVVDECHRGYLLDRELSDTELVFRDQKDYQSKYRSVIDYFDAF
KIGLTATPALHTVDIFGEPVFSYSYTDAVLDGHLNDHLPPVRIHTKLAEQGIHYEVNEEV
KVYDVVNNDIKIYNTPDELDFDVSEFNRKVMAPNFTKVVTKWLIESDAINPYSDAKTLVF
CVTDKHADEVVEAFKQACEDYHGEVEDDAIQKITGASDKPLEKIRLFKNDRLPNIAVTVD
LLTTGIDVPKICNLVFLRRVNSRILFEQMLGRATRLCPEISKGPFRIYDAVDIYKQLENV
NTMKPVVTNVDISFTDLTGEMANSNNEELQTLAKNQFIAKLQVKRRHLSPEQQEKFETIA
GQPPAQFIKELKTMPAEQLAEWFIGHPGLGELLDEKVKGGSGSDPLYISEHDDQVTHITT
GYGDGQRPEDYLRSFNDFVNANSNRLLAIQTVIQAPWELTRQSLKELALVLEQNKFREQD
LQVAWHEVKKEDIAARIIGFIRQAAIGEALIPFEQRVDNALNRILASQQWKTPQIQWLNT
IAKQMKATTIVDEAALEQGIFQHQGGVKRANKLFEQPIANVLLMFNKALWQNDISKSA
NT seq 3417 nt   +upstreamnt  +downstreamnt
atgggaagcaatattagtaacttcgattttcttaagcatcacgatgaattgttattgcgt
cttgcacaaacagctgaatggtgttttataccggaccctaacaccacgcttttaaagatg
cgccaattgggtgaggagctagcaaaaaacattgcagctcgcgttggtgtggcttgtggt
cagggaataaaccaagtcgatttacttcgtagccttgattactctcttaagctcgaacaa
cgtatcaaagattcctttcatacgataagaaaactcggcaatgccgctaatcacgatatc
acctcaaatagtcaccgtgatgctttacagtctttgcaaataggtcacgctttaagtatt
tggtaccaccagctttatggtggcgatgcggcgaaaggctttaagcctacaccgtttgta
aaacctaaagacccttcagaggacgttcggattctcgaagaaaaaatgctcgagcttgaa
cgccagcagcaacgcacttccgaacgtcttgcggttgcagaatcgctcaagcgacttgaa
caagaaaagatgcaagccgagcttaaacgtgcagagcaaatgcaagccgaaagtaaaatc
tgggagcaaattgccactgagcaagaagcgaaactcaatgaatacaaagcccagatggct
gccaccaatcttgagctgtataccgccttccaagctaaagatcaccaagcacaacaacaa
gaaattaagcgtgtcgaaaaactacctttttatttagatgaagccgaaacccgcatcatt
atagataaacagttaaatgaagctggttggaaagctgacaccacaaacttaaagttctct
aaaggtgcacggcctgtcgagaatgaaaacagagcaattgcggaatggcccaccagctct
ggtccggcagattatgtcttgtttatgggattgactcccgttgcagtcgttgaagctaaa
aaaacagctaagaatgtttatagctcaattgaccaagccaaacgttatgcaaaaggactt
gaaaccaagaatgcattcacaatagaaacttgttggagagacttcaaagtaccactaacg
tttgctacgaatggtcgtccataccttaagcagctagaacaagagagtggcatctggttt
ttagatgttcgcgataatagcaaccgacgtaaagcactcaaaggttggtattcaccaacc
gaaatcaaattgcttttaaaacaaacgccagagcaagcagagcaaaaacttgatgcgatg
gcctttgattacgacttaaagctacgagactaccaaataaacgctattaaagcggtcgag
caaagtattaaagacggcaaagatcgtgcgctggttgcaatggcaaccggtacaggtaaa
accaaaacctgtatagcgttggtttatcgactgctcaaatctgagcggtttaggcggatc
ttgttcttggttgatcgctcagcacttggtgaacaagctaccaatgatttcaaagaagtg
cgattagagcatctgcaaacttttgccgatacttttgatttgatgggactaaaagacatc
aagcccgaagacagtaccaaagttcatatcgccacagtacaaggtttggtccagcgcatt
ttatatccctcagataacgatacaaaacctggtgttggccaatacgattgtattgtggtc
gatgaatgccaccgtggttatttactcgatcgagagcttagtgataccgaattagtgttc
cgcgaccaaaaagactaccaatcaaaataccgctcggtaattgattatttcgacgctttt
aaaattggtctaactgcaactcctgcgttacatacggttgatatttttggtgaaccagta
ttcagctatagctataccgatgcagtacttgatggacatttaaatgatcatctgccgcct
gtacgcatccatactaagctcgccgaacaggggattcactatgaagtgaatgaagaagtg
aaggtatacgatgtcgtaaataacgatatcaaaatttataacaccccagatgagctagat
tttgatgtttcggaatttaaccgtaaggttatggcaccaaacttcaccaaagtcgtgacg
aaatggctaattgaaagtgatgcgattaatccttactcagatgccaaaacattggttttt
tgtgtcactgataagcatgccgatgaagtcgttgaagcctttaagcaagcctgtgaagac
taccatggagaagtggaagatgacgccattcaaaaaattactggcgcatccgacaaaccg
ctggaaaaaatccgtttatttaaaaatgaccgcttacccaatatagcagtcacggttgat
ctactcaccaccggcattgacgtacccaaaatatgcaatctggtatttttacgtcgggta
aacagcaggatcctcttcgagcagatgttaggtagggccacgcgcctatgcccagaaatt
agcaaaggtccatttcggatttacgatgccgtcgatatttataaacaactcgaaaacgtc
aataccatgaaacccgtggtgactaatgtcgacattagttttactgatctaacgggtgaa
atggccaacagcaataacgaagagttacagacactagccaaaaaccaatttatcgccaag
ttacaagtaaaaagacggcacttaagtcctgaacagcaagaaaaatttgaaaccattgca
gggcaaccaccagcacaattcatcaaagagcttaaaaccatgcccgcagaacaattagcg
gaatggtttattggccatccaggcttaggtgagttactggatgaaaaagtaaaaggaggc
tcaggaagcgacccgctatatatctctgagcatgatgaccaagtcacccatatcaccaca
ggttacggtgatggccaaagacctgaggactatttacgttcttttaatgactttgtgaat
gcaaacagtaaccgcttgctcgcaattcaaacagtcattcaagctccttgggaattaacc
cgacaaagcttaaaagaactggcattagtgcttgaacaaaataagtttagagaacaagat
ctgcaggtcgcatggcatgaggttaaaaaagaagatattgccgctcgtatcattggtttt
atccgtcaagcagctattggtgaagcattgatcccatttgagcagcgagttgataacgcc
ttaaatcgcatccttgcaagtcaacaatggaaaacaccgcaaattcaatggttaaacact
attgcaaagcaaatgaaagcaacaaccattgtcgatgaagctgcattagaacaaggtatt
tttcaacatcaaggcggggtaaaacgggccaataagctctttgagcaacccattgcgaat
gtactgctgatgttcaataaagccttatggcaaaacgatatcagtaagtccgcataa

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