Shewanella decolorationis: D0436_20830
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Entry
D0436_20830 CDS
T09167
Symbol
rpoH
Name
(GenBank) RNA polymerase sigma factor RpoH
KO
K03089
RNA polymerase sigma-32 factor
Organism
sdeo
Shewanella decolorationis
Brite
KEGG Orthology (KO) [BR:
sdeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdeo03021
]
D0436_20830 (rpoH)
Transcription machinery [BR:
sdeo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
D0436_20830 (rpoH)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
UCR_14kD
Fe_dep_repress
2Fe-2S_thioredx
Motif
Other DBs
NCBI-ProteinID:
QDZ92714
UniProt:
A0A5B8R1N5
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Position
246170..247027
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AA seq
285 aa
AA seq
DB search
MTFQTQSMALTVPQGSSSLEAYIHSVTSMTMLDAETEYELAKRLQETGDLQAAKQLIMSH
LRFVVHVAKGYSGYGLPQADLIQEGNIGLMKAVKRFDPDVGVRLVSFAVHWIKAEIHEYV
LKNWRIVKVATTKAQRKLFFNIRKAKTRLGWFSDDEVAMVAENLGVSKADVTEMESRMAA
QDPAFDLSSDNDDEQDFAPVHYLEDHSSDLAENIENDNWESNAQGRLLSAIKTLDERSQH
ILRARWLDDDKTTLQELAETYQVSAERIRQLEKNAMNKLKACMEA
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgacctttcaaacgcaatcaatggcactaacagtccctcagggcagcagtagtttagaa
gcttatatccattcagtgactagcatgacaatgttagacgctgagactgagtatgagtta
gccaagcgtttgcaggaaacgggtgatctgcaagcggctaagcaactgattatgtcgcac
ttacgctttgtggtgcatgttgccaagggctattcaggttacggtctgccacaggcggat
ttgatccaagaaggcaacatcggtctgatgaaagcggttaagcgcttcgatcccgatgtg
ggcgtccgtctagtgtcttttgctgtgcactggattaaagccgaaattcatgaatatgtg
ctaaaaaactggcgcattgtaaaagttgcaaccaccaaagcacaacgtaagttgttcttt
aatatccgtaaagcgaaaactcgcctcggttggtttagcgatgatgaagtcgcaatggtg
gcagaaaacttaggtgtatctaaggccgatgtgactgagatggaatcacgtatggcagcg
caggatcctgcgtttgacctgagcagtgataacgatgatgagcaggattttgcccctgtg
cattatcttgaggaccattcatcggatttagccgaaaatatcgaaaacgataactgggaa
tccaatgcccaaggtcgtttattatcggccatcaaaaccttagacgagcgtagccagcac
attctgcgtgcccgttggttagatgatgataaaaccacactgcaggaattagcagaaacc
tatcaagtctcggctgagcgcattcgccagttagagaaaaacgccatgaacaagcttaag
gcttgtatggaagcctaa
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