KEGG   Shewanella decolorationis: D0436_21645
Entry
D0436_21645       CDS       T09167                                 
Symbol
polA
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
sdeo  Shewanella decolorationis
Pathway
sdeo03030  DNA replication
sdeo03410  Base excision repair
sdeo03420  Nucleotide excision repair
sdeo03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:sdeo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    D0436_21645 (polA)
   03410 Base excision repair
    D0436_21645 (polA)
   03420 Nucleotide excision repair
    D0436_21645 (polA)
   03440 Homologous recombination
    D0436_21645 (polA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sdeo03032]
    D0436_21645 (polA)
   03400 DNA repair and recombination proteins [BR:sdeo03400]
    D0436_21645 (polA)
Enzymes [BR:sdeo01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     D0436_21645 (polA)
DNA replication proteins [BR:sdeo03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     D0436_21645 (polA)
DNA repair and recombination proteins [BR:sdeo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     D0436_21645 (polA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     D0436_21645 (polA)
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc DNA_polI_exo1 HHH_5
Other DBs
NCBI-ProteinID: QDZ92850
UniProt: A0A5B8R1U3
LinkDB
Position
complement(58523..61291)
AA seq 922 aa
MPTIANNPLVLVDGSSYLYRAYYAPPHLTNSKGEATGAVYGVVNMLRSLLSRYQPSHIAV
VFDAKGKTFRNDLYEEYKAHRPPMPDDLRSQIEPLHRIIRALGLPLISIPGVEADDVIGT
IARQASRENRAVLISTGDKDMAQLVDENITLINTMTDTIMGPEEVAAKYGVGPDRIIDFL
ALMGDKADNIPGLPGVGEKTALAMLTGAGSVANLLAEPEKVTELGFRGAKTMAAKIIDNA
DMLKLSYELATIKTDVELEQDWHELEAKPADRDELIKCYGEMEFKRWLAEVLDNKAPTTV
AAKVETAEPQEESTPSVTIETQYDTILTEAQLDEWIAKLKQAPLMAVDTETTSLDYMVAE
LVGLSFAVEAGKAAYLPLAHDYVGAPAQLDKQTALEKLRPILEDAKIKKVGQNLKYDISV
LANAGIKLQGVVFDTMLESYVFNSVASRHDMDGLALKYLGHKNIAFEDIAGKGAKQLTFN
QIPLETAAPYAAEDADITLRLHQHLWPRLEKETELASVFTDIELPLIQILSDIERQGVFI
DSMLLGQQSDELARKIDELETKAYDIAGEKFNLSSPKQLQVLFFEKLGYPVIKKTPKGAP
STAEEVLVELALDFPLPKVILEHRSLTKLKSTYTDKLPLMVNAKTGRVHTSYHQANAATG
RLSSSEPNLQNIPIRTEEGRRIRQAFIAPQGRKILAADYSQIELRIMAHLSQDAGLLKAF
AEGKDIHRATAAEVFGTDFDSVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRNEAQTY
IDTYFARYPGVLRYMEETRASAAELGYVSTLFGRRLYLPEIRDRNAMRRQAAERAAINAP
MQGTAADIIKKAMISIADWIKTNTQGEIAMIMQVHDELVFEVDADKAEALKLKVCELMAK
AANLDVELLAEAGIGDNWDQAH
NT seq 2769 nt   +upstreamnt  +downstreamnt
atgccgaccatagccaataacccacttgtccttgtggatggatcttcttatttgtatcgc
gcctattatgcgcctcctcacctgacaaactcaaagggcgaagctactggtgctgtttat
ggcgtagtgaatatgctacgcagcttattaagccgttatcaacctagccatattgctgtg
gtgttcgacgctaaaggcaaaaccttccgcaatgacttatatgaagaatacaaagcacat
cgcccacctatgccggatgacttgcgctcacaaattgaacccctgcaccgtattatccgc
gccttaggcttgcccttaatctctattccaggtgttgaagcggacgatgttatcggcact
atcgctcgccaagcgagccgcgaaaaccgcgccgtactgatcagcactggcgataaagat
atggcgcaactggttgatgaaaatatcacgctgatcaacaccatgacagataccatcatg
ggccctgaagaagttgcggctaaatatggtgttggcccagacagaattatcgatttcttg
gcgctgatgggcgataaggcagataacattcccggtttacccggcgtaggcgaaaaaacc
gcattagccatgctaacaggggcgggcagtgtcgccaatttgcttgcagaacccgaaaaa
gtcaccgaattaggctttaggggcgcaaaaaccatggcggcgaagatcatcgacaatgcc
gacatgctaaaactgtcctatgagcttgccaccattaaaaccgatgttgagctcgaacag
gattggcatgaactcgaagccaaacccgctgacagagatgagctgatcaaatgctatggc
gaaatggaatttaaacgctggcttgccgaagtcttagataataaggcgccaacgacggtc
gcagcaaaagttgaaacggccgaaccccaagaagaatcaacgcccagcgtcacgattgaa
acccaatacgataccattctgaccgaagctcaactcgatgagtggattgccaaactcaaa
caggcgccattaatggccgtagataccgagaccaccagcctagactatatggttgcggaa
ttggttggcctgtcctttgctgttgaagctggtaaagccgcctatctacccttagcccac
gattatgttggcgcgcccgcgcaattagataagcagacagccctcgaaaagctgcgtccg
atactcgaagacgccaagatcaaaaaagtcggtcaaaacctgaaatatgatatcagcgta
ttggccaatgccggcataaaactccaaggcgtggtattcgacactatgctcgaatcctat
gtatttaactcggtcgcatcacgccatgatatggatgggctggcgcttaaataccttggc
cataaaaatatcgccttcgaagatatcgcgggtaaaggcgctaaacagctgaccttcaac
caaattccactcgaaacagcagcgccctatgcagcggaagatgccgatattaccctgcgt
cttcatcaacatttgtggccaagactcgagaaagaaaccgaattagcctcggtctttacc
gatattgaactgccgctgatccaaatactgtccgatattgagcgccaaggcgtgtttatc
gatagtatgttgctcggccaacagagtgatgaactggcgcgtaaaatcgatgagttagaa
acaaaagcttatgatattgctggtgaaaaattcaatttaagttcaccaaagcaactgcaa
gtgctgttttttgaaaagctgggttatccggttattaaaaagactcctaagggcgcgccg
tctaccgcggaagaagtgctggtcgagttggcgctggatttccctctgcccaaagtgatc
cttgagcatcgcagcctgaccaagttaaagagtacttacaccgacaagctccccttaatg
gtgaatgcgaaaacgggtcgggtacatacaagctaccatcaggccaacgccgcaacaggg
cgtttgtcctcaagcgaacctaacctacagaatattcctatccgcacagaggaaggccgt
cgtattcgccaagcctttattgcaccgcaggggcgtaagattttagccgccgactattcg
cagattgaactaaggatcatggcgcatttatcccaagatgcaggcttactcaaagccttc
gccgaaggcaaagacattcacagagccaccgccgccgaagtatttggcaccgactttgat
agtgtcacctcggagcaacgtcgccgcgccaaagccgttaactttggccttatctatggc
atgtccgcctttggattggcgcgtcagctcgatattccccgcaacgaggcacaaacctac
atagatacttacttcgcccgctatccaggcgtattaaggtatatggaagaaacgcgagcc
agtgcagcagagcttggctatgtctctacgctatttggtcgccgtttgtatttacccgaa
attcgcgatcgtaatgcaatgcgccgccaagcagcagaaagagccgcgattaacgcccca
atgcaaggcaccgccgcagatatcataaaaaaagccatgatcagcattgccgattggata
aaaaccaatacccaaggtgaaatcgccatgattatgcaagtccacgacgaattagtgttc
gaagtcgatgccgataaagccgaagcactcaagctcaaggtgtgtgagctcatggccaaa
gcggccaatctggacgtggaacttctggcagaagctggtattggcgataactgggatcaa
gcccactag

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