Sphingomonas degradans: ACG3SL_19160
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Entry
ACG3SL_19160 CDS
T12016
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sder Sphingomonas degradans
Pathway
sder03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sder00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACG3SL_19160 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sder03021
]
ACG3SL_19160 (rho)
03019 Messenger RNA biogenesis [BR:
sder03019
]
ACG3SL_19160 (rho)
Transcription machinery [BR:
sder03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ACG3SL_19160 (rho)
Messenger RNA biogenesis [BR:
sder03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACG3SL_19160 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
ATPase_2
S1CSD-TOTE-2
AAA_22
Spore_III_AA
NACHT
AAA_25
GpA_ATPase
Fungal_virus_P2_C
AAA_14
AAA
ResIII
Motif
Other DBs
NCBI-ProteinID:
YBV25743
LinkDB
All DBs
Position
1:complement(4154702..4155958)
Genome browser
AA seq
418 aa
AA seq
DB search
MHLKDLKKKSPADLVTMAEELGVESASTLRKQDLLFAILKSQAENGDQIMGEGTIEVLPD
GFGFLRSPQANYLAGPDDIYVSPNQVRKFGLRTGDTVEGEIRAPKDGERYFALTRLVSVN
FDDPDAVRHRVNFDNLTPLYPERKLTLDTLDPTQKDKSARVIDIISPQGKGQRTLIVAPP
RVGKTVMLQNIAKAITENHPEVFLLVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLSIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPALDV
GKSGTRKEELLVDKNKLSKMWVLRRILMQMGTIDAMEFLLDKMKDSKTNEDFFDSMNQ
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcacctcaaggacctcaagaagaaatcgcccgcagacctggtcaccatggccgaggag
ctgggcgtcgagagcgcatcgacgctgcgcaagcaggatctgctcttcgcgatcctcaag
tcgcaggccgagaatggcgaccagatcatgggcgagggcacgatcgaagtgctccccgac
ggtttcggtttcctgcgcagcccgcaggccaattacctggccggtcccgacgacatctat
gtcagccccaaccaggtccgtaaattcggcctgcgcacgggcgacacggtggaaggcgaa
atccgcgcacccaaggatggcgagcgctatttcgcactgacccggctggtctccgtcaat
ttcgacgatcccgatgcggttcgccaccgcgtcaatttcgacaacctgacgccgctctat
cccgaacgcaagctgacgctcgacacgctcgacccgacgcagaaggacaagtcggcgcgc
gtcatcgacatcatcagcccgcagggcaagggccagcgcacgctgatcgtcgccccgccg
cgcgtcggcaagacggtgatgctccagaacatcgccaaggcgatcaccgagaaccatccc
gaagtgttcctgctggtgctgctcatcgatgagcgccccgaggaagtcaccgacatgcag
cgttcggtgaagggtgaggtcgtgtcctccacctttgacgaaccggcgacccgccacgtg
caagttgctgaaatggttatcgaaaaggcaaagcggctggtcgagcacaagaaggatgtc
gtcatcctgctcgattcgatcacgcgccttggccgcgcctacaacaccgtcgttcccagc
tcgggcaaggtgctgaccggtggcgtcgacgccaatgcgctccagcgcccgaagcgattc
ttcggcgccgcgcgcaacatcgaagagggcggctcgctctcgatcatcgccaccgcgctg
atcgacacgggcagccgcatggacgaagtcatcttcgaagagttcaagggcaccggcaac
tcggaaatcgtcctcgaccgcaaggttgcggacaagcgcatcttccccgcgctcgacgtc
ggcaagtcgggcacccgcaaggaagagctgctggtcgacaagaacaagctgtccaagatg
tgggtgctgcgccgcatcctgatgcagatgggcacgatcgacgcgatggagttcctcctc
gacaagatgaaggactccaagaccaacgaggatttcttcgattcgatgaaccagtga
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integrated database retrieval system
