Staphylococcus devriesei: Q2T90_11440
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Entry
Q2T90_11440 CDS
T09366
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sdev
Staphylococcus devriesei
Pathway
sdev03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdev00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q2T90_11440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdev03019
]
Q2T90_11440
Messenger RNA biogenesis [BR:
sdev03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Q2T90_11440
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
vATP-synt_E
SBE2_C
HTH_10
Motif
Other DBs
NCBI-ProteinID:
WKU13341
LinkDB
All DBs
Position
2331125..2332798
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AA seq
557 aa
AA seq
DB search
MSLVKKKNDDIRIIPLGGVGEIAKNMYIVEVDDEMFMLDAGLMFPEDEMLGVDIVIPDIQ
YVIENKEKLKGIFLSHGHEHAIGAVSYILEQIDAPVYGSKLTLALVKENMKARNVKKKVR
YYTVNNESVMRFKNVNITFFSTTHSIPGSLGICIHTSYGAIVYTGEFKFDQSLQGHYAPD
MKRMAEIGEEGVFALISDSTEAEKPGYNTPENVIESHIYDAFAKVKGRLIVSCYASNFIR
IQQVLNTASKLNRKVSFLGRSLESSFNIARKMGYFDIPKDLLIPINEVENYPKNEVVIIA
TGMEGEPIEALGQMAQNKHKIMNIEEGDSVYLAITASANMEVIIANTLNELVRAGAYVIP
NNKKIHASSHGCMEELKMMINIMKPEYFIPVQGEFKMQIAHAKLANEAGVAPEKIFLVEK
GDVIHYDGKDMVLNEKVHSGNILIDGIGVGDVGNIVLRDRHLLAEDGIFIAVVTLDPKNR
RIAAGPEIQSRGFVYVRESEELMNEAEEKVREIVEAGLQEKRIEWSEIKQNMRDQISKLL
FESTKRRPMIIPVISEI
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
ttgagtttagtaaagaaaaaaaatgacgatattcgcatcatcccactaggtggcgtgggc
gaaatcgctaaaaatatgtatatcgttgaagtagacgatgaaatgtttatgttggatgca
ggattaatgtttccagaagatgaaatgttaggtgtagatatcgttatacctgatatccaa
tatgtaatcgagaataaagaaaaattaaaaggtatctttttaagccatggccacgaacat
gctattggtgcagtaagctatattctagaacaaattgacgcacctgtttacggttcaaaa
ttgacattagcgcttgttaaagaaaatatgaaagcacgtaatgtgaagaaaaaagtccgt
tattacactgtgaataatgaatcagttatgagatttaaaaatgtaaatattacatttttc
agtactacacatagtattccaggtagtttaggaatttgcattcatacatcttatggtgca
attgtgtatactggagaatttaaatttgatcaaagtttacaaggtcattatgcaccagat
atgaaacgcatggctgaaattggagaagaaggcgtatttgctttaattagtgattctact
gaagctgagaaacctggatacaatacaccagaaaacgtcatcgaatctcatatttatgat
gcatttgcaaaagttaaaggacgcttaattgtatcttgctacgcctcaaactttattaga
attcaacaagttttaaatacggcgagcaaattaaatcgtaaagtttcattcttaggacgt
tcactagaaagttcatttaatatcgcacgtaagatgggatattttgatattcctaaagac
ttattaattccaattaatgaagttgaaaattatcctaaaaatgaagttgtcattattgct
acaggtatggaaggcgagcctattgaagcattggggcaaatggcacaaaacaaacataaa
attatgaacattgaagaaggcgattctgtatatctagccatcactgcttcagcaaatatg
gaagttatcattgctaatacgttaaatgagttagtacgtgccggcgcctatgtcattcct
aataataaaaaaattcacgcatcaagtcacggttgcatggaagaattaaaaatgatgata
aatattatgaaacctgaatactttatccctgtacaaggtgaatttaaaatgcaaattgcc
catgctaaattggcaaatgaagctggagtagctcctgaaaaaatcttccttgttgaaaaa
ggtgatgtaattcactatgacggtaaagatatggtattaaatgaaaaggtacattcaggt
aatatattaattgatggtattggtgttggagatgtaggtaacattgtattaagagatcgt
catttattagcagaagacggcatctttatcgctgtagttacgttagatcctaaaaataga
cgtattgctgctgggccagaaattcaatcacgaggctttgtatacgttcgtgaaagtgaa
gagttaatgaacgaagctgaagaaaaagtacgtgaaatcgttgaagcgggtcttcaagaa
aagcgtattgagtggtcagaaatcaagcaaaatatgcgtgaccaaattagtaaactttta
tttgaaagcactaagcgtcgtccaatgattataccagtcatttctgagatataa
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