Steroidobacter denitrificans: ACG33_06980
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Entry
ACG33_06980 CDS
T04296
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sdf
Steroidobacter denitrificans
Pathway
sdf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACG33_06980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdf03019
]
ACG33_06980
03016 Transfer RNA biogenesis [BR:
sdf03016
]
ACG33_06980
Enzymes [BR:
sdf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
ACG33_06980
Messenger RNA biogenesis [BR:
sdf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ACG33_06980
Transfer RNA biogenesis [BR:
sdf03016
]
Prokaryotic type
tRNA degradation factors
ACG33_06980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
KH_2
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
AMN46845
UniProt:
A0A127FB69
LinkDB
All DBs
Position
1549262..1551286
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AA seq
674 aa
AA seq
DB search
MARQADGAVYVTMGDTVVLVTAVARKEADPKKDFFPLTVNYVEKTYAAGRIPGGFFKREG
RPSEKETLTSRLIDRPIRPLFPEGFLNEVQIVATVISVNPEIDPDIPAMLGASAALALSG
APFQGPIAAAKVGYSDGQYVLNPTSTQLKTSKLDLVVAGTAEAVLMVESQADCLSEEVML
GAVMFGHEQMQAAIRAIGELKTEAGKPAWNWQAAPANEALQAALAANAETPLAEAYKITE
KAARRDRIREIRETAVSALSAGETPAYTPGQVATEFEDLEYRIVRGRILAGEPRIDGRDM
KTVRPLSIRTGVLPRTHGSALFTRGETQALVVTTLGTGRDAQIIDALAGERKEPFMLHYN
FPPFSVGETGMMGSPKRREIGHGNLARRGISAVMPDMTTFPYVIRVVSEVLESNGSSSMA
SVCGTSLALMDAGVPLKASVAGVAMGLVKEGERFQVLTDILGDEDHLGDMDFKVAGTRTG
VTALQMDIKINGITREIMQVALEQARAGRLHILEQMDQVLPAARATMSEWAPSIITMKID
PEKIREVIGKGGAVIRAITEETGTSIDIENDGTVKIASVDGVSGREAQRRIELITAEVEV
GRVYEGRVARLMDFGAFVTILPGKDGLVHISQISEERVERVSDKLKEGDVVRVKVLEVDR
QGRVRLSMRSIEAG
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggcccggcaggccgacggtgccgtctacgtcaccatgggcgacacggtcgtgctggtc
accgccgtggcgcgcaaggaggccgatcccaagaaggatttctttccgctgaccgtcaat
tacgtcgagaagacctatgccgcgggccgtattcccggcggtttcttcaagcgcgaaggc
cgtccctcggagaaggagacattgacctcacgcttgatcgatcggccgattcgcccgctg
tttccggaaggatttctgaacgaggtccaaatcgtcgctaccgtgatctccgtgaatccg
gaaatcgatccggacatcccggcgatgctgggagcctccgcggccctggcgctgtccggc
gcaccctttcagggaccgattgccgccgcgaaggtcggctatagcgatggtcagtacgtg
ctcaacccgacatcgactcaactcaagacctccaagctcgatctggtcgtcgccggcacc
gccgaggccgtgctgatggtggaatcgcaagccgactgcctgtccgaggaagtgatgctg
ggcgccgtcatgttcggccatgagcagatgcaagctgcgatcagggcgatcggcgaattg
aagaccgaagccggcaaaccggcctggaattggcaggctgcgcccgcgaatgaagcttta
caggccgccctggctgcgaacgccgagacgccgctggcggaagcctacaagatcactgaa
aaggccgcccgccgcgatcgcatccgggaaatccgcgagacggccgtatcggcgctgagc
gccggcgagaccccggcatacacgccggggcaggtcgcgacggaattcgaggatctggaa
taccggatcgtgcgcggccggatcctggccggcgagccgcgtatcgacggccgcgatatg
aagaccgtacgtcctttgtcgatacggaccggcgtcctgccccgtacgcatggctcggca
ttgttcacgcgcggcgagacccaggcgctggtggtgacgaccctgggcaccgggcgcgat
gcgcagatcatcgatgcactggccggagagcgtaaggagccgttcatgctccattacaat
ttcccacccttcagtgtcggcgagacgggaatgatgggctcgccgaagcgccgcgaaatc
ggtcacggcaatctggcccgccgcggtatcagcgcggtcatgcccgacatgacgaccttc
ccctatgtgattcgggtcgtgtccgaagtcctggaatccaacggctccagttccatggcc
agcgtgtgcggcaccagcctggcgctgatggatgccggcgtaccgctcaaggcctcggtg
gccggggtggcgatgggcctggtgaaggagggcgagcgcttccaggtattgaccgacatt
ctgggtgacgaggatcatctgggcgatatggatttcaaggtggccggtacacgcacgggc
gtgacggcgctgcagatggatatcaagatcaacggcatcacccgcgaaatcatgcaagtc
gcgctggagcaggcacgggccggccgcctgcacatcctggagcagatggaccaggtgctg
cccgccgcccgtgcaaccatgtccgaatgggcgccctcgatcatcaccatgaagatcgac
cctgaaaagattcgtgaagtcatcggcaagggcggagccgtcatccgcgccatcaccgag
gagaccggcacgtcgatcgacatcgagaacgacggtacggtgaagatcgcctcggtcgac
ggcgtatcgggccgcgaagctcagcggcgtatcgaactgatcacggccgaggtcgaggtc
ggccgggtttatgaggggcgcgtcgcgcgcctgatggatttcggcgcattcgtcaccatt
ctgccgggcaaggatggactggtgcatatttcgcagatttccgaggagcgtgtcgagcgc
gtcagcgacaaactcaaggaaggcgatgtagtacgtgtcaaggtgctggaagtcgaccgc
cagggtcgtgtgcgtttgagcatgcgcagcatagaggcaggctga
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