Steroidobacter denitrificans: ACG33_08155
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Entry
ACG33_08155 CDS
T04296
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sdf
Steroidobacter denitrificans
Brite
KEGG Orthology (KO) [BR:
sdf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdf03019
]
ACG33_08155
Enzymes [BR:
sdf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ACG33_08155
Messenger RNA biogenesis [BR:
sdf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ACG33_08155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
AAA_23
nSTAND3
T2SSE
AAA_30
NACHT
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AMN47067
UniProt:
A0A127F9H8
LinkDB
All DBs
Position
complement(1795321..1799355)
Genome browser
AA seq
1344 aa
AA seq
DB search
MRLQYDPALPITAHRDEIAQALHQHPLVVVCGATGSGKTTQLPKICLEAGRGSFGLIGHT
QPRRIAARAIAARLANELGTNVGGAVGYQVRFTDRSGPDCRVKLMTDGILLRELKNDRLL
RRYDTLIIDEAHERSLNIDFLLGVIKELLPRRPELRVIITSATIDPQRFAGFFGGAPVIE
VSGRSYPVEVRYRPLSGDQDDLELSLSEGVIAAVQELDRRDRGDVLVFLPGEKQIREAAD
ALDKAHLHHTEVLPLYARLSTRDQEKIFEKHGPRRIVLATNVAETSLTVPGIRHVIDSGL
ARISRYSVRGKVQRLPIEPVSQASADQRKGRAGRERAGICIRLYGEEDFEQRAAFTAPEV
LRTNLASVILQMAALELGDPQSFPFLDPPDTRLINDGYRLLQELKAVDDARQVTRLGHQL
ATLPLDPRLGRMLISASHHGCLAQMLVIAAFLAVQDPRERPSDQQTQADQKHALFADPRS
DFMMVLNLWTVFTEQSANLSGSQLRKWCREHFLSYLRLREWQDLRRQLEETVRELDLRPN
DTPPRYDELHQAILTGFLGGIGVLDERREYEGARGTRFVIAPGTPLAAKPPKWVVAASLM
ETTRLYARSVAAVEPHWIESAGAHLLRRSYSEPHWVPERGFVAAYEAVALYGLTLAARRR
INYGSVAPREAREIFVREALVEGRTRLRAPFLEHNHRLRRELEALEARVRRRDILVDEQT
ICDFYLRHLPEQVHSTAALEKWLKGGGRSRSVSSSHESEGDRARRLFMTRSDLMRRGTPE
MTADSHPDTLSIAGNALPLLYRFEPGEADDGVSLSLPLPLLAATLPAHLAPIPGWREEAI
TALLRALPKPIRRYFVPVPEHAALAAGQIRAGADYHAVLADWINATVRAGGGAAALTAFA
GEAGLSAAMLADLPIPDYLRMNVRVVDLDGGLLAQGRDLQVLKRRLREHEFESAALMNDP
AETSPMAASCGHRSAAGKARQPVIGAHPAPISASAALAPAPRSIPAARRPEATHPAPVSP
TAEQRYHRAWDFGELPASRILERQGLRYTVYPGLLDRGDGVVPAQFAHPIPAQQALRAGI
IRLAILALPDQYKYARSRFQRERELALLGQGVNARQPLADALAWRVFADGLWESGSQGGA
GTGMAILADLQQDALPRTSTDALPRNAAQFQSLLDRRRAGLAEVTERVLAQVLQVLRELR
SIRQGLAQLSAPGYQELQRDVQLQLQQLMPEDFPRDVPELLWPHLARYMKALTRRIEKAA
GNARRDAELLARAAPFAAACEQLEREARGVALRMELDRLQWMLQEFRVSLFAQDLRTAVP
VSDKRLAAQLERARAQLRQESGAG
NT seq
4035 nt
NT seq
+upstream
nt +downstream
nt
ctgcggcttcagtacgatccggcgctacccatcaccgcgcatcgcgatgagatcgcgcag
gccctgcatcagcatccactcgtcgtggtttgcggtgcgaccggctccggtaagaccacg
cagttgcccaaaatctgcctggaagctggacgcggcagcttcggattgatcggccacacg
caacctcggcgcatcgctgcgcgggcgatcgccgcacgcctggccaacgaattaggtacg
aacgtgggtggcgccgtcggctaccaggtgcgcttcacggatcgcagcggtccggattgc
cgtgtcaagctcatgaccgacggtatcctgctgcgcgaactgaagaacgaccggctgctg
cgccgctacgataccctgatcatcgacgaggcccacgagcgcagcctcaatatcgatttt
ctgctgggcgtgatcaaggaactgctgccgcggcgccccgagctgcgagtgatcatcact
tccgcgaccatcgatccgcagcgtttcgcgggattcttcggcggtgctcccgtcatcgaa
gtctccggcaggagttatccggtcgaagtacgctatcgcccgctgtccggcgaccaggat
gacctggagctgtcgctgagcgagggcgtcatcgcagcggtccaggaactggatcgccgc
gaccgtggcgacgtgctggtgttcctgcctggagaaaaacagattcgcgaggccgccgac
gcgctcgacaaggcacatctgcaccacaccgaggtgttgccgctgtatgcgcgcctgtcc
acacgcgaccaggaaaagatcttcgagaaacatgggccgcgccgcatcgtgctggcgacg
aatgtcgcggagacttcgctcaccgtccccggcatccgccacgtgatcgactcggggctg
gcacgcatcagccgttacagcgtgcgcggcaaggtgcagcgcctgccgatcgagccggtg
tcgcaggcgagtgccgatcagcgcaagggccgggccgggcgcgagcgcgccggtatctgt
attcgcctgtacggcgaggaagacttcgaacagcgcgccgccttcaccgcgccggaggtg
ctgcgtaccaacctggccagcgtgattctacagatggccgcgctggagctgggtgacccg
cagtcctttccgttcctggatccacccgatacccggctcatcaacgatggttatcgcctg
ctgcaggagctcaaggcggtcgatgatgctcggcaagtgacccgcctggggcaccaactc
gctacgttgccgctggatccacgcctgggacgcatgctgatcagcgccagccatcatggc
tgcctggcgcagatgctggtgatcgccgccttcctcgccgtacaggatcctcgtgagcgg
ccttcggaccagcagactcaggccgatcagaagcatgcgctgttcgccgatccgcgctcg
gatttcatgatggtgctgaatctgtggacagtctttaccgaacaatcggcgaatctgtcg
ggcagtcagctgcgcaagtggtgtcgcgagcatttcctgtcgtatctacgcctgcgagag
tggcaggatctgcgccgccagttggaggagaccgtgcgcgagctggatctgcggcccaac
gatacgcctccgcggtatgacgaactgcatcaggccatcctgaccggcttcctgggcggc
atcggtgtgctggatgagcgccgggaatacgaaggcgcacgcggcacacgtttcgtgatc
gctcccggaacgcccctggctgccaagccgccgaaatgggtggtggccgcaagtctgatg
gagaccacgcgcctgtatgcccgcagcgtcgccgcggtggaaccgcattggatcgagtcg
gccggtgcgcatctgctcaggcgcagctacagtgagccgcactgggtgccggagcgcggc
ttcgtcgccgcctatgaggccgtggcgctgtatgggctgacgctggctgcacgccgccgg
atcaactatggcagcgttgcgccgcgggaggcgcgcgagattttcgtgcgtgaggcattg
gtggaagggcgcactcgcctgcgagcgccgtttctggagcacaaccaccggctgcgccgc
gaactcgaggccctggaggcccgggtacggcggcgcgacatcctggtagacgaacagacg
atatgcgatttctacctgcggcatctgcccgaacaggtgcattccacggcggcgctggag
aaatggctgaaaggtggcggccgttcgcgttcagtctcatcgagtcatgaatctgaaggg
gatcgggcacgccggttgttcatgacccgcagcgatctcatgcggcgcggcacgccggaa
atgactgcggacagtcatccggatacgctgtcgatcgccggtaatgccctgccgctgctt
tatcgtttcgagcctggcgaggccgacgacggtgtgagtttgtcgctaccgctgccgttg
ctggccgccacgctgccggcgcatctggcgccgatcccgggttggcgcgaggaggcgatc
acggcgctgctgcgcgcgctgcccaagccgatacggagatacttcgtacccgtcccggag
cacgcggcgcttgccgccggacaaatccgcgccggtgcggactaccatgccgtattggct
gactggatcaatgcgacggtgcgcgccggtggcggcgcggcggctctgacggcctttgcg
ggcgaggcgggactgtctgctgccatgcttgcggatctgccgatcccggattacctgcgc
atgaacgtgcgggtggtggatctcgacggcggattgcttgctcagggccgcgatctgcag
gtgctgaagcgccgtctgcgcgagcatgagttcgagtcggcggcattgatgaacgatccg
gctgaaacgtccccgatggccgcctcttgcggccatcggtccgcagccggaaaggcgaga
cagcctgtgatcggggcgcatccggcaccaatatcggcatcggcagcactagcacctgca
cctcgttcgataccggccgcacgcaggccggaagcgacacacccagcgccggtttcgccc
accgcggagcagcggtatcatcgtgcctgggactttggcgagttgcctgccagccggatc
ctggaacgccagggactgcgctacacggtatatccaggtctgctggatcgcggcgacggc
gtcgtgccggcgcagtttgcccatcccatcccggcgcagcaggcgctgcgcgccggcatc
atacggctggcgatcctggccttgccggatcaatacaagtatgcacgcagccgattccag
cgggaacgcgagctggcgctgctgggacagggcgtcaatgcccggcagccgctggccgat
gcactggcctggcgagtgttcgcagacggattgtgggagagtggatcgcaaggtggtgcc
ggtacgggaatggcgatcctggccgatctgcaacaggatgcgctgccgcgtacctcgacc
gatgcgctgccgcgcaatgcagcgcagttccaatcactgctggatcggcgtcgggccggc
ctcgccgaagtgactgagcgcgtgctggcgcaggtgttgcaggtattgcgtgagctgcgc
agcatacgacagggcctggcgcagctgagcgccccgggatatcaggagctgcagcgtgat
gtgcagctgcaattgcagcaactgatgcccgaggatttcccacgagatgttcccgaactg
ctgtggcctcacttggcgcgctacatgaaggcactcacgcgacgcatcgagaaggccgcc
ggcaatgcacggcgcgatgccgagctgctcgcccgtgcagcaccgttcgccgccgcttgc
gagcaattggaacgcgaggcacgcggcgtggcgttgcgcatggagctcgaccggctgcaa
tggatgctccaggagtttcgcgtgtccttgtttgcccaggatttacgcaccgcggtgccg
gtgtcggacaagcggctggccgcacagctcgaacgtgcccgggcgcaattgcgccaggag
agcggggcgggataa
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