Steroidobacter denitrificans: ACG33_14020
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Entry
ACG33_14020 CDS
T04296
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sdf
Steroidobacter denitrificans
Pathway
sdf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACG33_14020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdf03019
]
ACG33_14020
03009 Ribosome biogenesis [BR:
sdf03009
]
ACG33_14020
Enzymes [BR:
sdf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ACG33_14020
Messenger RNA biogenesis [BR:
sdf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACG33_14020
Ribosome biogenesis [BR:
sdf03009
]
Prokaryotic type
rRNA helicases
ACG33_14020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
P-loop_SecA
HEM4
IPPT
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
AMN48193
UniProt:
A0A127FCQ2
LinkDB
All DBs
Position
complement(3114661..3116517)
Genome browser
AA seq
618 aa
AA seq
DB search
MPPEGTRFRDLLANEALLTALDAVGYESPSPIQAATIPPLLAGADVLGQAQTGTGKTAAF
ALPILSRIELARRAPQALVLVPTRELAIQVAEAFQRYAAGMSAFHVAPIYGGQSYTPQLQ
TLRRGVHTVVGTPGRIMDHIERGTLALETLKYFVLDEADEMLRMGFIDDVEWILERAPRC
QTALFSATMPAAVRRIAQKYLREPVEVTIKSKTTTAAKIRQRYWIVSGVHKLDALTRILE
AEPFDGMLVFARTKLATEDLTQRLAARGFAVEALNGDIAQAQRERTITRLKAGQIDIVVA
TDVAARGLDVERISHVVNYDVPYDPESYVHRIGRTGRAGRSGEAILFIAPRERNMLRVIE
RATRQSIAPMQLPSIEDVNRRRVERFNERLTQILASGAGNAMRNVVERYQQEHDVPMVEI
AAALASIVQGTKSLMESSDSVEAGPVEAGSREVHTPPAGEFEHRPALRGEARAAVSRSRL
ESVSDGPTRRPERPSGKGAGRVSPTEVETYRIEVGQVHGVKPANIVGAIANEAGLDGRHI
GRVVICEDHSFVDLPPGMPKEVFRELQKTRIAGQKLQISRALKTQVQKMRRERPSESARG
KSARGGPAKRESTRPPRR
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atcccgcccgaaggtacaaggtttcgcgatctactggcgaatgaggccctgctcacggcg
ttggatgcggtcggctacgaatcgccttcgcctatccaggcggcgacgataccccctctg
ctggcgggcgccgatgtgctgggccaggcgcagaccgggacaggcaagaccgccgcgttt
gcactgccgatcttgtcgaggatcgagctggcgcggcgcgctccccaggcgctagtgctg
gtgccgacgcgtgagctggcgatccaggtcgccgaggcctttcagcgctacgcagcagga
atgagtgcttttcatgttgcgccgatctacggcggacaaagctatacgccccagttgcag
accctgcggcgcggcgtccataccgtcgtcggtacgccgggacgcatcatggatcatatc
gagcgcggcacgctcgctctggaaacgctgaaatattttgtgctcgacgaagcggacgag
atgctgcgcatgggcttcatcgatgacgtcgagtggatactggagcgggcgccgcggtgt
cagactgcactgttttccgcgacgatgcctgcggcggtacgccgtatcgcgcagaagtat
ctgcgcgaaccggtggaagtgaccatcaagagcaagactacgacggcagccaagatccgc
cagcgctattggatcgtcagcggagtgcacaagctcgatgccctgacgcgcatcctggaa
gccgaacctttcgacggcatgctggtgtttgctcgcaccaaactcgcgacggaagacttg
acgcagcggctcgcggcgcgtggcttcgcggtcgaggcattgaacggcgacatcgctcag
gcacagcgtgaacgcacgatcacgaggctcaaggcgggccagatcgacatcgtcgtggcg
accgacgtcgcggcgcggggactcgatgtcgaacgcatcagtcatgtggtgaactatgat
gttccctacgatccggaatcctatgtgcaccgcatcggccgcacgggccgcgccgggcgc
agcggcgaggccatcctgttcattgcgccgcgtgaacgaaacatgctgcgcgtgatcgag
cgggccactcgccagagcatcgccccgatgcaactgcccagcatcgaagacgtcaatcgg
cggcgcgtcgaacgattcaacgaacgcctcacccagatattggccagcggtgccggcaat
gcaatgcgcaatgtcgtcgaacgctaccagcaggagcatgatgtaccgatggtcgagatc
gccgcggccctggcaagtatcgtgcaggggacgaaatcgctgatggagagttcggactcg
gtcgaggccggtccggtcgaggccggttcccgggaagtccacacgcctccggcaggcgag
ttcgaacatcggcccgcattgcggggcgaggctcgggccgccgtatcgcgatccaggctt
gagtcggtatcggatggaccgacaaggcggccggagcggccttccgggaaaggcgcgggc
cgagtttcaccgaccgaggtggagacgtaccgcatcgaggtcggtcaggtgcatggcgtc
aaacccgccaatatcgtcggtgccatcgccaacgaggcgggcctcgacggacgccacatc
ggccgcgtggtgatctgcgaggatcatagttttgtcgatttgccgccgggcatgcccaag
gaggtgtttcgcgagttacagaagacgcgcatcgccggacagaagctgcagatcagccgt
gctttgaagacgcaggtgcagaagatgcgccgggagcgtccaagtgaatcagcaaggggt
aaatcagcaagaggcgggcctgcgaagcgcgaatccacgcggccgccgcggcgttga
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