Sphingomonas daechungensis: H9L15_05915
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Entry
H9L15_05915 CDS
T07072
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sdh
Sphingomonas daechungensis
Pathway
sdh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9L15_05915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdh03019
]
H9L15_05915
Enzymes [BR:
sdh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H9L15_05915
Messenger RNA biogenesis [BR:
sdh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H9L15_05915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
HEM4
AAA_19
ERCC3_RAD25_C
P-loop_SecA
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
QNP44083
LinkDB
All DBs
Position
complement(1112915..1114441)
Genome browser
AA seq
508 aa
AA seq
DB search
MSFHNLGLSKPLLDALAAKNYSQATPIQTQAIPTVLTGRDLLGIAQTGTGKTAAFMLPSL
DRLAANRNIPKPGQIRMLVLAPTRELASQIAASAETYGRFMRLSVGVIFGGVPNSKSVRT
VSRGLDVLVATPGRLLDLIDQRALSLRELEILVLDEADQMLDLGFIHALKRIVALVPAKR
QTLFFSATMPRAIKELADKYLTNPAEVAVTPVAKTADRIGQAVVMVNQPEKTALLTIFLQ
SEKTERTLVFSRTKHGADKIVRMLSAAGISANAIHGNKSQSQREKAIREFKSGEVSVLIA
TDIAARGIDIPGVSHVINYDLPEVPEQYVHRIGRTARAGAEGKALAFCSPDERGLLRDIE
RLTRLKIDVAPLPANFLETAEKLKRLKPAPKKVEDQPRRASHGFKADRRADGQRRDQRNE
RQRHPHRGEGHAAHRSSAQDRNGQRRDDQRGDGSRSSYRPEAYREADAGPRQSRPNDTRG
PSRPDGGRPHGKFHGRRGRPGGPRRAQG
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
ttgtcatttcataaccttgggctgtccaagccccttctcgacgcgctcgcggcaaagaat
tattcgcaagcgacgccgatccagacccaggcgatcccgacggttctcacgggccgcgat
ctcctcggcattgcccagacgggcaccggcaagacggcggcgttcatgctgccgtcgctc
gaccgtctcgcggccaatcgcaacatcccgaagccaggccagatccgcatgctggtgctt
gccccgacccgcgagcttgcctcgcagatcgccgcgagcgccgaaacctacggccgcttc
atgcgcctgtcggtcggcgtcatcttcggcggcgttcccaactcgaagagcgtccgcacg
gtttcgcgcggtctcgacgtgctcgtcgcgaccccgggccgcctgctcgatctgatcgat
cagcgtgcgctcagccttcgcgagctcgaaatcctcgtcctcgacgaggctgaccagatg
ctcgacctcggcttcatccatgcgctgaagcggattgttgccttggttccggccaagcgc
cagactctgttcttctcggccacgatgccgcgggcgatcaaggagctggccgacaagtat
ctgaccaacccggccgaagtcgccgtgaccccggtcgcgaagactgccgatcgcatcggc
caggccgttgtgatggtcaatcagccggaaaagaccgcgcttctgaccatcttcctgcag
tcggaaaagaccgagcgcacactcgtgttcagccgtacgaagcatggcgccgacaagatc
gtccgcatgttgagcgcggcggggatctccgcgaacgcgatccacggcaacaagagccag
tcgcagcgcgagaaggcgatccgcgagttcaagtcgggcgaggtttcggtgctgattgcc
accgacattgccgcgcgcgggatcgacatcccgggtgtcagccacgtcatcaactacgac
ctgcccgaagtccccgagcagtacgtccaccgcatcggccggacggctcgcgccggggcc
gaggggaaggcccttgccttctgctcgcccgatgagcgcggcctgctgcgcgacatcgag
cggctaacgcgactgaagatcgacgttgctccgcttccggcgaacttcctcgagactgcg
gagaagcttaagcgtctcaagccggcaccgaagaaggtcgaggaccagcctcgccgtgcg
tcgcatggtttcaaggcggatcgccgtgctgacggccagcggcgcgatcagcgcaatgag
cgccagcgtcatccgcatcgcggcgaggggcatgccgctcaccgatcctcggctcaggat
cgcaatggccagcggcgtgacgatcagcgtggcgacggcagccgttcgtcctaccggccc
gaggcctatcgtgaagccgacgcgggtccgcgtcagtctcgtccgaacgacacgcgcggt
ccgtcccgtccggacggtggccgtcctcatgggaagttccacggccgtcgcggccgaccg
ggcggcccgcgccgcgcgcagggctag
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