Sphingomonas daechungensis: H9L15_08125
Help
Entry
H9L15_08125 CDS
T07072
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sdh
Sphingomonas daechungensis
Pathway
sdh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H9L15_08125 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdh03019
]
H9L15_08125 (pnp)
03016 Transfer RNA biogenesis [BR:
sdh03016
]
H9L15_08125 (pnp)
Enzymes [BR:
sdh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
H9L15_08125 (pnp)
Messenger RNA biogenesis [BR:
sdh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
H9L15_08125 (pnp)
Transfer RNA biogenesis [BR:
sdh03016
]
Prokaryotic type
tRNA degradation factors
H9L15_08125 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
S1_RRP5
BioW
Motif
Other DBs
NCBI-ProteinID:
QNP42313
UniProt:
A0ABX6SZC1
LinkDB
All DBs
Position
1516242..1518608
Genome browser
AA seq
788 aa
AA seq
DB search
MFKIHTVETEIGGKTLKLETGRVARQADGAVLATMGETVVLCAVTAAKSVKPGQDFFPLT
VHYQEKFSAAGRIPGGFFKRERGATEKETLTSRLIDRPIRPLFPEGFYNEVLVIAQVLSY
DGENEPDILAMIAASTALTISGVPFMGPIGAARVGFVDGEYVLNPTQAQIAEGDLDLVMA
GTPNAVMMVESEAKELSEEQMLGAVMFGHAASQKICNLIIDLAEKAAKDPWELAQSDDKS
AIKAKLKDIIGKDVEAAYKLTNKSERSAALNAARDKAKEAFAEAEPQEQLVASKAVKGLE
ADIVRGAILKEGRRIDGRDTKTVRQIEAMVHFLPRTHGSALFTRGETQAIVTTTLGTKES
EQMIDGLEGLSYQRFMLHYNFPPYSVGEVGRFGAPGRREVGHGKLAWRALHPMLPSIEEF
PYTIRVLSDITESNGSSSMATVCGGSLALMDAGVPLKRPVAGIAMGLILEGKDFAVISDI
LGDEDHLGDMDFKVAGTSEGVTSLQMDIKVAGITEEIMKTALAQAKDGRAHILGEMAKAL
DHTREELSAHAPRIETMQIAKDKIREVIGTGGKVIREIVAETGAKVDIDDDGTIKIASSD
PAKIEAARNWIRGIVAEPEPGTIYTGKVASLVDFGAFVTFMPGKDGLVHVSEIKNERVEN
VRDVLTEGQEVKVKLLEVDQRGKVRLSMRLVDQETGEELPDTRPPREPREGGDRGPRGDR
GDRGRHGRGGGRDDRGPRRDRGDRGDRGPRGEGGDRGPRGEGRGDRGPGREREGGENEGN
APEFARPS
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgttcaaaatccatactgttgaaaccgagatcggcggcaagacgctgaagctcgaaacg
ggccgcgtggcccgccaggccgatggcgccgttctcgcgaccatgggcgaaaccgtggtg
ctttgcgcggtcaccgccgcaaagtcggtcaagccggggcaggacttcttcccgctgacc
gtccactaccaggaaaagttctcggccgccggccgtatcccgggcggtttctttaagcgc
gagcgtggagcgaccgaaaaggaaacgctgaccagccgcctgatcgaccgtccgatccgc
ccgctgttcccggaaggcttctacaacgaagtcctcgtgatcgcgcaggtcctctcctac
gacggcgagaacgagcccgacatcctcgcgatgatcgccgcctcaaccgcactgaccatt
tccggcgtgcccttcatgggcccgatcggcgccgcccgcgtcggcttcgtcgacggtgag
tacgtcctcaacccgacccaggctcagatcgccgagggcgacctcgacctcgtcatggcc
ggcactccgaacgccgtgatgatggtggagtccgaggccaaggaattgagcgaagagcag
atgctcggcgccgtcatgttcggccacgccgccagccagaagatctgcaacctcatcatc
gacctcgccgaaaaggccgccaaggacccgtgggagctcgctcagagcgacgacaagtcg
gcgatcaaggcgaagctcaaggacatcatcggcaaggacgtcgaggctgcctacaagctg
accaacaagtcggagcgttccgccgctctcaacgccgcccgcgacaaggccaaggaagcc
ttcgccgaagccgagccgcaggagcagctggtcgcctcgaaggccgtcaagggcctcgaa
gccgacatcgttcgcggtgcgatcctcaaggaaggccgtcgcatcgacggccgcgacacc
aagacggtccgccagatcgaagcgatggtccacttccttccgcgcacgcacggctcggcc
ctgttcacgcgcggtgagacgcaggcgatcgtgaccacgacgctcggcaccaaggaatcg
gagcagatgatcgatgggctggagggtctctcctaccagcgcttcatgctgcactataac
ttcccgccctactcggtcggtgaagtcggacgcttcggcgctccgggccgccgcgaagtc
ggccacggcaagctcgcatggcgcgcgctgcacccgatgctgccgtcgatcgaggaattc
ccgtacaccatccgcgtcctgtccgacatcacggagagcaacggctcctcgtcgatggcg
acggtctgcggcggctcgcttgccctcatggacgccggcgttccgctgaagcgtccggtg
gccggcatcgccatgggcctgatcctcgaaggcaaggacttcgcggtgatcagcgacatc
cttggtgacgaggaccacctcggcgacatggacttcaaggtcgcgggcacgtcggaaggc
gtcacctcgctgcagatggacatcaaggtcgccggcatcaccgaggagatcatgaagacc
gctctcgcccaggcgaaggacggccgtgctcacatcctcggcgagatggcgaaggcgctc
gatcacacgcgcgaagagctgtcggctcacgcgccgcgcatcgagacgatgcagatcgcc
aaggacaagatccgcgaagtcatcggcaccggcggcaaggtcatccgcgaaatcgtcgcg
gagaccggtgccaaggtcgacatcgacgacgacggcacgatcaagatcgcgtcttcggac
ccggccaagatcgaagccgcccgcaactggatccgcggcatcgtcgccgagccggagccg
ggcacgatctacaccggcaaggtcgcgagcctcgtcgacttcggtgcattcgtcaccttc
atgccgggcaaggacggcctcgtgcacgtctcggaaatcaagaacgagcgtgtcgagaac
gtccgcgacgtcctgaccgaaggccaggaagtgaaggtcaagctgctcgaggtcgaccag
cgcggcaaggttcgcctgtcgatgcgcctcgtcgatcaggagacaggcgaagagcttccg
gacacccgcccgccgagggagccgcgtgaaggcggcgaccgtggcccgcgcggtgaccgt
ggcgatcgcggccgtcatggccgtggcggcggacgcgacgatcgcggcccgcgccgtgac
cgtggagaccgtggtgaccgtggtcctcgcggtgaaggcggcgaccgtggcccgcgcggc
gaaggacgcggcgaccgcggcccgggccgtgagcgcgaaggcggagaaaacgaaggcaac
gcgcccgagttcgcccggccttcctga
DBGET
integrated database retrieval system
