Sphingomonas daechungensis: H9L15_11020
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Entry
H9L15_11020 CDS
T07072
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sdh
Sphingomonas daechungensis
Pathway
sdh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sdh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H9L15_11020 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdh03400
]
H9L15_11020 (mfd)
Enzymes [BR:
sdh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H9L15_11020 (mfd)
DNA repair and recombination proteins [BR:
sdh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H9L15_11020 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
MFD_D3
UB2H
Cas3-like_C_2
AAA_30
SNF2-rel_dom
SecA_DEAD
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QNP42679
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All DBs
Position
2049980..2053471
Genome browser
AA seq
1163 aa
AA seq
DB search
MTDVLQRVLRSSEPLTLAGVPSGFLPVLAADLARAAHGSSKSGRAVVIASDESAMRALAE
TVPLFAPEVEVLTLPSWDCLPYDRTSPALRVMAERLATLNALQAKAEGPQLLVATENAAS
QRLLTPFRVRQLTKRIEAGARIDRNQLVSQLNALGYERVESVAEHGEYAVRGSLIDLYPA
GEPLALRLDFFGDEIESLRQFDPADQRSTDRAKAFTLMPASEALLDEETIKRFRSRYRET
FGATATGDPLYEAISDSRRMSGMEHWLPLFEERLTTLFDHLGENDLIVRDSGVDQALAAR
RESIDDYYANRRKTMSGEAGSYRPLEPSALYLTEEEWTQAVADRPIHLTSPFPEPESART
VSFGVEPARDFAPERTRQENIYEAVVNHVAKLRKTGHKVILASYTRGARERLAGLLSDHG
LKSEKLADSWQEALGSKTQPALLVLPLDHGFTAPDIAVLTEQDMLGDRLVRRRKKRKGAA
AFLSELATLTPGDLVVHNDHGIGRYEGLTSINVGKSPHDCVALEYAGGNKLYVPVENIEL
LTRYGNESEGVVLDRLGGEAWQRRKSRMKERIREIAGELIKTAAMRATRPGVVMEPDSAF
PQFVNRFPYEETDDQDRAIEEVLADLESGKPMDRLVCGDVGFGKTEVALRAAFVAAMSGM
QVAVVAPTTLLARQHYRNFVERLEGFPIRVGRLSRLVPAAEAKKTREDLANGQVDIVIGT
HAILGKGVEFKRLGLVIVDEEQHFGVTHKERLKALKADVHVLTLTATPIPRTLQMAMSGL
RELSVIQTPPVDRLAVRTYVSPWDSVVIREALLREHYRGGQSFFVVPRIADLPEMEEWLR
EEVPEVKAVTAHGQMAPTEVEERMSAFYDRKYDVLLSTTIVESGLDIPSANTLIVHRADI
FGLAQLYQLRGRVGRSKIRAYAYLTTPADRSITETAEKRLQVLANLDSLGAGFQLASHDL
DIRGAGNLLGDEQSGHIKEVGFELYQSMLEDAIVEQKAGGIPRQEEFTPQISVDAPILIP
ETYVPDLDLRMGLYRRLGELDDKQGVEGFAAELIDRFGPLPSETQNLLKIVETKLNAKRA
MIAKLDVGPKGALVTFADSGFPDLPGLLGYIDRLKGTAKLRPDSKLVISRDWPTSEARLS
GALQLSTGLARVAAAAEREKEAA
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atgacggacgtgctgcagcgcgtcctgcgctcatccgagcctttgaccctcgctggcgtg
ccgtccggtttcctgcccgtgctcgccgccgatctcgcgcgtgccgcgcatggctcgtcg
aaaagcggccgggcggtggtgatcgcctccgacgaaagcgccatgcgggcactcgccgaa
acggtcccgctgtttgcgcccgaagtcgaagtgctgaccctgccttcttgggactgcctg
ccttacgaccggacctcacccgccctccgggtgatggctgagcggcttgcgaccttgaac
gcgttgcaagccaaagcggagggcccgcaactcctggtggcgacggaaaatgctgcgagc
cagcggctgctcacaccgttccgggttcgccagctcacgaagcggatcgaggcgggcgcg
cggatcgaccggaatcagttggtgtcgcagctcaatgcccttggctacgagcgcgtcgaa
tcggtggctgagcatggcgaatatgccgttcgcgggtcgttgatcgacctgtatcctgcg
ggcgagcccctcgcccttcgcctcgacttcttcggcgatgagatcgagagcctgaggcag
ttcgatcccgccgaccagcgctcgaccgaccgggccaaggcgttcacgctgatgcccgcc
tccgaggccctgctggacgaagagacgatcaagcgcttccgttcgcgctatcgcgagacg
ttcggggccacggcgaccggcgacccgctctacgaagcgatctcggacagccggcggatg
agcgggatggagcattggctgccgctgttcgaggaacggctgacgacgcttttcgaccat
cttggcgagaacgacctgatcgttcgcgattccggtgtcgatcaggcgctcgccgcgcgc
cgggaatcgatcgacgattattatgccaatcgccgtaagaccatgtcgggggaagctgga
agctaccgcccgctcgagccgagtgcgctctatcttacggaagaagagtggacgcaggcc
gttgcggatcgaccgatccacctgacgtcaccgtttcccgagcccgaaagtgcccgcacc
gtcagcttcggcgtcgaaccggcgcgggatttcgctcccgaacggacacgccaggaaaat
atctacgaagccgtcgtcaatcatgtcgccaagctacggaagaccggtcacaaagttatc
cttgccagctacacgcgcggggctcgcgagcgtcttgccgggttgctgtccgaccatggg
ctgaaatccgagaaattggcggatagctggcaggaagcgctcggcagcaagacgcagccc
gcccttctagtccttccgttggatcacggcttcaccgcgcccgacatcgcggttctcacc
gagcaggacatgctcggcgaccgactcgttcgtcgccgaaagaagcggaagggcgcagcg
gcgtttctttccgagctggcgacgctcacgcccggcgatctcgtcgttcacaacgatcac
ggcatcggccgttacgaaggcctgacgtcaatcaacgtcggcaagtctcctcacgactgt
gtcgcgctcgaatatgccggcggcaacaagctctatgtgccggtcgaaaatatcgagctt
ctgacccgctacggcaacgaaagcgaaggcgtggtgctcgaccgccttggcggcgaagct
tggcagcggcgcaagtcgcggatgaaggagcgcattcgcgagatcgccggtgagctgatc
aagacggcggcaatgcgcgctacgcgcccgggcgtggtgatggagccggacagcgccttc
ccgcagttcgtcaaccgcttcccctacgaagaaaccgacgatcaggatcgggcgatcgag
gaagttcttgccgacctcgagagcggcaagccgatggaccgactggtctgcggcgacgtc
ggcttcggcaaaaccgaagttgcgcttcgggcagcattcgttgcggccatgtccgggatg
caggtcgcggtggtggcgccgaccaccctcctcgcccgccagcattaccggaacttcgtc
gaacgcctcgaaggtttcccgatccgcgtcggccggctctcacgtctcgtgcctgccgcg
gaggcgaagaaaacacgcgaagacctcgccaatgggcaggtcgatatcgtcatcggcacc
cacgcgatcctcggcaagggcgtcgagttcaagaggttggggctggtgatcgtcgatgag
gagcagcatttcggagtcacgcacaaggagcggctgaaggccctcaaggccgacgtgcac
gtgctgacgcttaccgcgacaccgattccgcgaacgctgcaaatggccatgagcggactg
cgcgaattgagcgttatccagacaccaccggtcgaccgcctggcggttcgcacctacgtt
tcaccctgggactccgtcgtgatccgcgaagccctgctgcgcgagcattaccgcggcggg
cagagcttctttgtcgttccacggattgccgacctgcccgagatggaggaatggctccgc
gaagaggtgcccgaggtcaaagcggtcaccgcgcatgggcagatggcaccgaccgaagtc
gaagagcggatgagcgctttttacgaccgcaagtacgatgtcctgctgtcgacgacgatc
gtcgagagcggtctcgacatccccagcgccaacaccctcatcgtgcatcgtgcggacatc
tttggactcgctcagctctatcagctgcgtgggcgcgtcggccgatccaagatacgcgct
tacgcctatctcaccacgcccgccgaccggtcgattacggagacggcggagaaaaggctt
caggtgctcgccaacctcgatagcctcggcgcgggcttccagctcgcgagccatgatctc
gacattcgaggggcgggcaacttgctcggcgatgagcagtctggtcatatcaaggaagtc
ggcttcgagctctatcagtcgatgcttgaggacgcgatcgtcgagcaaaaggcaggcggg
attccgcggcaggaagagttcacgccgcaaatcagcgtcgatgccccgatcctcattcca
gaaacctatgttcccgacctcgacctccggatgggcctctatcgccgcctcggcgagcta
gatgacaagcagggcgttgaaggctttgcggcggaattgatcgatcgcttcggcccgttg
ccgtctgagacgcaaaacctgctgaagatcgtcgagaccaagcttaacgcgaaaagggcg
atgatcgccaagctggacgtcggaccgaagggcgcgcttgtgacctttgccgacagcggc
ttcccggatctccctggcctgctcggctacatcgatcggctcaagggcacggcgaagctc
cggccagacagcaagctggtcatcagccgcgactggccgacttccgaggcgcggctcagt
ggggcccttcagctttcgacggggctcgcccgcgtcgctgcggctgccgagcgggagaaa
gaagcggcttag
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integrated database retrieval system
