Sphingomonas daechungensis: H9L15_14160
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Entry
H9L15_14160 CDS
T07072
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sdh
Sphingomonas daechungensis
Pathway
sdh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sdh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H9L15_14160 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdh03021
]
H9L15_14160 (rpoC)
03400 DNA repair and recombination proteins [BR:
sdh03400
]
H9L15_14160 (rpoC)
Enzymes [BR:
sdh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H9L15_14160 (rpoC)
Transcription machinery [BR:
sdh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H9L15_14160 (rpoC)
DNA repair and recombination proteins [BR:
sdh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H9L15_14160 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QNP43086
LinkDB
All DBs
Position
2590075..2594349
Genome browser
AA seq
1424 aa
AA seq
DB search
MNELTPFANPIAKPETFDEIKIGIASPEKIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERILYFESYVVLEPGLTPLEKNQLLTEDELLAAQDEYGEDAFSAG
IGAEAVKTMLMDLDLEGERKELLDELAVTKSELKPKKIIKRLKVVESFIDSGNRPEWMIL
EVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYSRLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSLEKENEPGQGMLLSDMTEVHQALAA
GAVTLHSKIVSRVPQTDEDGNTYMKRFETTPGRMLLGETLPKSHKVPFETVNRVLTKKEI
GDVIDIVYRHTGQKETVLFADAIMALGFRHAFRAGISFGKDDMVIPADKVKLVDDTRALV
KDYEQQYQDGLITQQEKYNKVIDAWSRCGDQVASAMMKEISATPTREDGRQADLNSIYMM
AHSGARGSQAQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVSQDAVIIEDDCGTDRALEMRAIVQGGATIASLGERVLGRTTA
EDVIDAKSGDVIIPEGALLDEAMVAQIEAIGLQGVKIRSPLVCASKQGVCAKCYGRDLAR
GTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSNLEAPVDGTIEFRDMPTI
TDPRGRHISLSRSGEIAILDMDGRELSTHRVPYGAHLLCESGHIVSKGDRIAEWDPSFSP
VITERAGTVKYQDLIENRTMSEQIDESTGIAQRVVTDDMAKSKKDALQPRLTLTGDKAEE
AGVYRLAQGAIVAVEDGQKVEAGEVLARMPREAARTRDITGGLPRVAELFEARKPKENAI
IAKVSGKVSFKKDYKAKRKIAIIPDDGSEAVEYLVPKSKVIDVQEGDYVKRGDNLVGGSP
DPHDILEVLGVEALAEYLVSEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITDGGDTTLL
AGEQVDREEMDEINSKLDKKQKKAEGKPVLLGITKASLQTRSFISAASFQETTRVLTEAA
VQGKVDTLTGLKENVIVGRLIPAGTGSSMKELRVAASSRDAALRATHRRMQEALIAPNSA
EELRAAENARSVRDDKAGTGPDPLSEVVPSGHGTDADAGDYLTE
NT seq
4275 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactgacgccattcgcaaatccgatcgccaagcccgagacgttcgacgagatc
aagatcggcatcgcgagcccggaaaagatccgcagctggtcgttcggcgagatcaagaag
ccggagaccatcaactaccgcacgttcaagccggagcgtgacggcctcttctgtgcgcgc
atcttcggtccgatcaaggattacgagtgcctgtgcggcaagtacaagcgcatgaagtac
aagggcatcgtctgcgaaaagtgcggcgtggaagtgaccgtttcgaaggtccgccgcgag
cgcatgggccatatcgagctcgcagcgcccgttgcccacatctggttcctgaagtcgctt
ccgagccgcatcggcctcctgctcgacatgcagctgaagcagctcgagcgcatcctgtat
ttcgagagctacgttgttcttgaaccgggcctgaccccgctcgagaagaaccagctcctg
accgaggacgagcttctcgccgcgcaggacgagtatggcgaagacgccttctcggccggc
atcggcgccgaagcggtcaagaccatgctcatggacctcgacctcgagggtgagcgcaag
gaactgctcgacgagcttgcggtcacgaagtccgaactgaagccgaagaagatcatcaag
cggctgaaggtcgtcgaaagcttcatcgattccggcaaccgtccggagtggatgatcctt
gaagtcgtgccggtcattccgcccgagcttcgcccgctcgttccgctggacggcggccgc
ttcgcgacgtcggatctcaacgacctttatcgccgcgtcatcaaccgtaacaaccgcctg
aagcggctcatcgagctgcgcgctccggacatcatcgtccgcaacgaaaagcgcatgctt
caggaggctgtcgacgctctgttcgacaacggccgccgcggccgcacgatcacgggcgcc
aacaagcgtccgctgaagtcgctcagcgacatgctcaagggcaagcagggccgcttccgt
cagaacctgctcggcaagcgcgtcgactattcgggccgctcggtcatcgtgaccggaccg
gagctcaagctgcaccagtgcggccttccgaagaagatggcgctcgagctgttcaagccg
ttcatctactcgcgcctcgacgccaagggtctctcgatgaccctgaagcaggcgaagaag
tgggtcgaaaaggagcgcaaggaagtctgggacatcctggacgaagtgatccgtgagcac
ccggttctgctgaaccgcgcgccgacgcttcaccgtctcggcatccaggcgttcgagccg
gtcctgatcgagggcaaggcgatccagcttcacccgctggtctgcgccgcgttcaatgcc
gacttcgacggcgaccagatggcggtgcacgtcccgctgagcctcgaagctcagctggaa
gcccgcgtcctgatgatgtccacgaacaacatcctgtcgcccgccaacggcaagccgatc
atcgttccgtcgcaggacatggttctcggcctctactatctcagcctcgagaaagagaat
gagcctggccagggcatgctgctcagcgacatgaccgaggttcaccaggctctcgcagcc
ggtgccgtgacccttcattcgaagattgtcagccgcgtcccgcagacggacgaggacggc
aacacctacatgaagcggttcgagaccactccggggcgcatgctcctcggcgagaccctt
ccgaagagccacaaggtgcccttcgagacggtgaaccgtgtgctgaccaagaaggagatc
ggcgacgtcatcgacatcgtctatcgccacactggccagaaggagacggtgctgttcgcc
gacgccatcatggcgcttggtttccgccacgcgttccgcgccggcatctcgttcggcaag
gacgacatggtcatcccggccgacaaggtgaagctggtcgacgatacccgcgcgctcgtg
aaggattacgagcagcagtatcaggacggcctgatcacccagcaggaaaagtacaacaag
gtgatcgacgcctggtcgcgttgcggcgaccaagtcgcctcggcgatgatgaaggaaatt
tcggcaacgccgacgcgtgaggatggccgccaggcggacctgaactcgatctacatgatg
gcccactcgggcgctcgtggctcgcaggcgcagatcaagcagcttgcgggcatgcgcggc
ctgatggccaagccgtcgggcgagatcatcgaaacgccgatcatctcgaacttcaaggaa
ggcctgaccgtccttgaatacttcaactcgacccacggcgcccgcaagggcctggccgac
acggcgctcaagacggcgaactcgggttacctgacccgccgtctcgtcgacgtgtcgcag
gatgccgtgatcatcgaggacgactgcggcaccgaccgtgcgctggaaatgcgcgcgatc
gtgcagggtggtgccaccatcgcttcgctcggtgagcgcgtccttggccgcaccacggcc
gaagatgtcatcgacgcgaagtcgggcgatgtgatcattccggaaggtgcgcttctcgac
gaggcgatggtcgcccagatcgaggcgatcggcctgcagggcgtgaagatccgctcgccg
ctggtctgcgcttcgaagcagggcgtctgcgccaagtgctatggccgtgacctcgctcgc
ggtacgccggtcaacatcggtgaggctgtcggcgtcattgccgcccagtcgatcggtgag
cctggcacgcagctgacgatgcggaccttccacatcggcggcgcggctcagctcaacgag
cagtcgaacctcgaagcgccggtcgacggcacgatcgagttccgcgatatgccgacgatc
accgacccgcgcggccggcacatctcgctgtcccgctctggcgaaatcgcgatcctcgac
atggacggccgcgagctttcgacccaccgcgttccgtacggcgctcacctgctgtgcgag
agcggccacatcgtcagcaagggcgatcggattgccgaatgggatccgtcgttcagcccg
gtcatcaccgagcgtgctggtaccgtgaagtaccaggacctcatcgagaaccggacgatg
tcggagcagatcgacgagtccaccggtatcgcacagcgtgtcgtgaccgacgacatggcg
aagtcgaagaaggacgcgcttcagccgcgcctgactttgaccggcgacaaggccgaagaa
gccggtgtctaccgtctggctcaaggcgccatcgtcgctgtcgaggacggccagaaggtc
gaagccggcgaagtgctcgcccgtatgccgcgggaagccgcgcgtacgcgtgacattacc
ggcggtctgccgcgcgtcgccgagctcttcgaagcccgcaagcccaaggaaaacgcgatc
atcgcgaaggtctcgggcaaggtcagcttcaagaaggactacaaggccaagcgcaagatc
gcgatcatcccggacgacggttcggaggcggtcgagtatctggtgccgaagtcgaaggtc
atcgacgtccaggaaggcgattacgtgaagcgcggcgacaacctcgtcggcggttcgcct
gatccgcacgacatcctggaagttctcggtgtcgaggcacttgccgagtacctcgtgagc
gagatccaggaagtctatcgactgcagggcgtgaagatcaacgacaagcacatcgaggtg
atcgttcgccagatgctgcagaaggtcgagatcaccgacggcggcgacaccacgctgctg
gccggcgagcaggtcgatcgcgaggagatggacgagatcaactccaagctcgacaagaag
cagaagaaggctgaaggcaagccggtcctccttggcatcaccaaggcgagcctgcagacc
cgcagcttcatctctgctgcgtcgttccaggagacgacccgcgtcctcaccgaagcggcc
gtccagggcaaggtcgacacgctcacgggtctcaaggagaacgtgatcgtgggacgcctg
atcccggccggtaccggctccagcatgaaggaactccgggttgcggcttccagccgtgac
gcggccctccgcgcgacgcaccgtcgcatgcaggaagccctgatcgctccgaattcggct
gaagaacttcgcgctgcggagaatgcacgttcggttcgtgacgataaggcaggcacgggt
cccgacccgctctccgaagtcgttccgagcggtcatggcaccgatgcggacgcgggcgac
tatctgacggagtag
DBGET
integrated database retrieval system
