Spiroplasma diminutum: SDIMI_v3c00030
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Entry
SDIMI_v3c00030 CDS
T02741
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
sdi
Spiroplasma diminutum
Brite
KEGG Orthology (KO) [BR:
sdi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdi03032
]
SDIMI_v3c00030 (gyrB)
03400 DNA repair and recombination proteins [BR:
sdi03400
]
SDIMI_v3c00030 (gyrB)
Enzymes [BR:
sdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
SDIMI_v3c00030 (gyrB)
DNA replication proteins [BR:
sdi03032
]
Prokaryotic type
DNA Topoisomerases
SDIMI_v3c00030 (gyrB)
DNA repair and recombination proteins [BR:
sdi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SDIMI_v3c00030 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
TOPRIM_C
HATPase_c_3
Motif
Other DBs
NCBI-GeneID:
16853830
NCBI-ProteinID:
AGR41707
UniProt:
S5M124
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Position
2656..4560
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AA seq
634 aa
AA seq
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MENNKYGASQIQVLEGLEAVRKRPGMYIGNTNKVGLHHMIWEILDNSVDEALAGFCDEIS
IFITDENEIIIKDNGRGIPVDIHPKTKKTTLETIFTVLHAGGKFDESTYKVSGGLHGVGA
SVVNALSLYVEAMISRDGKIYQQKFYDGGTKATEIKEIGISDSNGSIIRFKPDPEIFKET
TEFDFKIIQNKIRQLAFLNKKLKLNLYDQRNDKFLTYVFEDGIKDYIKEINSGKEKVHDE
IFYVSNNLNDIEVEISIQYNETYDENVFSFCNNIFTSEGGSHEEGFKTALLKSINSYTND
LKNFKGNKFTWDDLKEGIVSVISIKHRDPLYEGQTKAKLSNLDAKESVAEILNEGFKEFL
LKNPNDAKKIIEKILISQKARKAAQRAREDTRRKSAIDNFSLPGKLADCESKNIDECELY
LVEGDSAGGSAKTGRNRKTQAILSLRGKVLNVEKVKQSKVFDNNEIQSIIAAVGVGVKND
INLKKLRYGKIIIMTDADVDGAHIRVLLLTFFYRYMKDLILNGNVYIAQPPLYKIDAGKN
NVDYAYNDLELEQLKESKYNELKYTIQRYKGLGEMDPIQLWETTMDPERRTMIQIKVEDA
FLANEVFSSLMGENVDLRKQFITENAQFVENIDI
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atggaaaataataagtatggagctagtcaaattcaagttcttgaaggattagaagctgtt
agaaaaagacctggtatgtatattggaaatactaataaagtgggtcttcatcatatgatt
tgagaaattttagataattctgttgatgaagcattagcaggtttttgtgatgaaatatct
atttttattaccgatgaaaatgaaataataataaaagataatggaagaggaattccggtg
gatattcatcctaaaacaaaaaaaactacattagaaactatttttacagttttacatgct
ggtgggaagttcgatgagtctacttataaagtatcaggtggactacatggagttggtgct
tcagtagtaaatgcattgtctctatatgttgaagcaatgatttcaagagatggaaaaata
tatcaacaaaaattttatgatggtggaactaaagcaacagaaataaaagaaattggaatt
tctgactcaaatggttctattataagatttaaacctgatccagaaatttttaaagaaaca
acagaatttgattttaaaataattcaaaataaaataagacaattagcttttctaaataag
aaacttaaattaaatttatatgatcaaagaaatgataaatttttgacttatgtttttgaa
gatggaattaaagattatataaaagaaattaatagtggaaaagaaaaagtacatgatgaa
attttttatgtatcaaataatttaaatgatattgaagttgaaatttcaattcaatataat
gaaacatacgatgagaatgtcttttcattctgtaataatatttttacttctgaaggtggt
tcacatgaagaaggatttaaaacagctttattaaaatctattaattcatatacaaatgat
ttaaaaaattttaaaggaaacaaatttacttgagatgatttaaaagaaggaattgtttca
gtaatttcaattaaacatagagatcctttatatgagggacaaacaaaagctaaattatca
aatcttgacgcaaaagagtctgttgcagaaattttaaatgaagggtttaaagaattttta
cttaaaaatccaaatgatgcaaaaaaaattattgaaaaaattttaatttctcaaaaagca
agaaaagctgctcaaagagcaagagaagatactagaagaaaatcagcaattgataatttc
tcacttcctggaaaattagctgactgtgaatcaaaaaatattgatgaatgtgaattatat
cttgtagagggagattctgctggtggaagtgcaaaaactggaagaaacagaaaaactcaa
gcaatactttctttaagaggaaaagtattaaatgttgaaaaagtaaagcaatcaaaagta
tttgataataatgaaattcaatcaataattgcagctgttggagtcggagtaaaaaatgat
atcaatcttaaaaaattgagatatggaaaaattattattatgactgacgctgatgtggat
ggtgctcatattcgagttttacttttaacttttttctatagatatatgaaggatttaatt
ttaaatggtaatgtttatattgctcaaccaccattatataaaattgatgctggaaaaaat
aatgttgactatgcatacaatgatttagaacttgaacaattaaaagaaagcaaatataac
gaattaaaatatacaattcagagatataaaggacttggagaaatggatccaattcaattg
tgagaaactacaatggatcctgaaagaagaactatgattcaaattaaagtagaagatgca
tttttagcaaatgaagttttttctagtttaatgggagaaaatgttgacttaagaaaacaa
tttattacagaaaatgcgcaatttgtagaaaatatagatatttaa
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