Spiroplasma diminutum: SDIMI_v3c00460
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Entry
SDIMI_v3c00460 CDS
T02741
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sdi
Spiroplasma diminutum
Pathway
sdi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sdi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SDIMI_v3c00460 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdi03021
]
SDIMI_v3c00460 (rpoC)
03400 DNA repair and recombination proteins [BR:
sdi03400
]
SDIMI_v3c00460 (rpoC)
Enzymes [BR:
sdi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SDIMI_v3c00460 (rpoC)
Transcription machinery [BR:
sdi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SDIMI_v3c00460 (rpoC)
DNA repair and recombination proteins [BR:
sdi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SDIMI_v3c00460 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-GeneID:
16853801
NCBI-ProteinID:
AGR41750
UniProt:
S5MIL5
LinkDB
All DBs
Position
44676..48425
Genome browser
AA seq
1249 aa
AA seq
DB search
MAISNKRMIKIELASPDVIRSWSRGEVTKPETINYKTLKTEKEGLFDERIFGPTRNYECT
CGKYKKVKNKGKICERCGVEITESIVRRERMGHIELEEPVTHIWMLKVAPSRIASILDLK
TKEVEEVVYFVSHIVLDPGSSKHLKKGMVLDLGNAKASVKTREKLLKTLEDIKAGIEPDT
FAWKRAENLINQLRTTNLAFSMDEAAIFISRYINAKFGIGASAIEDLLKSIDLDKEIEKI
REDLREKKGSSEQNKLMKRLEVLDSLKKSESRPEWMVLHVIPVIPPDIRPIIQLDGGRFT
TSEINDLYRRIIIRNERLKKVKSMGAPSIIVNNEKRMLQEAVDALLDNERKPRPVTGKDK
RPLKSLTSILKGKQGRFRQNLLGKRVDYSGRSVIAIGPDLKMYQAGIPRDMAITLFKPFI
IRRLQEKDLAENVKVAEKMILTNDAKVWDILEEVIKDRPVLLNRAPTLHRLGIQAFEPKL
VKGKAIRLHPLVTTAFNADFDGDQMAVHLPISDEAVAEARALMLGSKAILGPKDGKPIVT
PTQDMILGNYYITTEEKGVLGEGTLFSNYKEVKIAYETNSVSLNAIVVIPVSELKDKKIS
EKHKDKFLITTVGKIFFNQMFVEEFPWIVNSNINNAESEIEKFIIDGNIDIRNYIENEYE
IQQPIKKKELSSIIERYFKLFGAQKTAQMLDNMKDLGFKFSSKSGTTISAADVVAYTEKF
DEFKVADEKVAQITEYFNMGMLTRTEKKRRVINVWSQVKDKIQNRLEDVLKKDPKNPVFV
MADSGARGNVSNFTQLVGMRGLMNDPKGDIKEIPIKSSFREGLTVSEYFISTHGARKGMA
DVALKTADSGYLTRRLVDISQEIIVTEEDCKTTKGFDVHSIIETKHDNIIVPLKDRLVGR
FTFNDVIDDKGNTIVEANTLITLKLADEIIKAGVEEVQIRTVLTCDTNRGVCRKCYGVNL
ATGEIVTLGEPVGVIAAQSIGEPGTQLTMRTFHTGGVAGGADITQGLPRIKELLDVTNPK
GSIAIISQIDGIVKEAREEDGIITIVVTSDQDERKYKSQYGAILRVTEGEVVTRGQKLTE
GAINIKELLEVARIEDVQNYILKEVQKVYRLQGIEISDKYIEIIVKQMLNKVKIIDSGET
ELLPGEVISSRTFRSEVKNAIMAGKKPPLAKHVIFGIKKAPLESDSWLSSASFQDTARVL
VKAVIKGKVDKLEGLKENIMLGNLIPAGTGLTGSADIIQKGKETYDSEY
NT seq
3750 nt
NT seq
+upstream
nt +downstream
nt
atggcaatttcaaataaaagaatgattaaaattgaattagcttctccagatgtgattaga
agttgatcacgtggtgaagttacaaaaccagaaacaattaactataagacattaaaaact
gaaaaagaaggtttatttgatgaaagaatctttggaccaactagaaattatgaatgtact
tgtggtaaatacaaaaaagtaaaaaataaaggaaaaatttgtgaacgttgtggagtagaa
attactgaatcaattgttagacgtgaaagaatgggtcacattgagttagaagaaccagtt
actcatatttgaatgttaaaagttgctccttcaagaattgcttcaattttagatttaaaa
actaaagaagttgaagaagttgtttactttgtaagtcatattgttttagatccaggaagt
tcaaaacaccttaaaaaaggtatggttttagatttaggaaatgctaaagcaagtgtaaaa
acaagagaaaaattattaaaaactcttgaagacattaaagctggtattgaaccagatact
tttgcttgaaaaagagcagaaaatttaattaatcaattaagaactacaaatttagctttc
tcaatggatgaagctgcaatatttatttcaagatatattaatgcaaaatttggaatcgga
gcaagtgctattgaagatttattaaaaagcattgatttagataaagaaattgaaaaaatt
agagaagacttaagagagaaaaaaggttcttcagaacaaaacaaattaatgaaacgttta
gaagttttagattcactaaaaaaatctgaatcaagaccagaatgaatggtattacatgta
attccagttattccaccagatattagaccaattattcaattggatggtggtagatttact
acttctgaaattaatgacttgtacagaagaattattattagaaatgaacgtctaaaaaaa
gttaaatcaatgggagcaccaagtattattgttaacaatgagaaacgtatgcttcaagaa
gctgttgatgctttattagataatgagcgtaaaccaagaccagtaactggtaaagataaa
cgtcctttaaaatcattaacatcaattttaaaaggaaaacaaggaagattccgtcaaaac
cttttaggaaaacgtgttgactattcagggcgttcagttattgcaattggaccagattta
aaaatgtaccaagcaggtatcccaagagatatggcaattacattatttaaaccatttatt
attagaagattacaagaaaaagatcttgctgaaaacgtaaaagttgcagaaaaaatgatc
ttaactaacgatgcaaaagtttgagatatattagaagaagtaattaaggatagaccggtt
ttactaaaccgtgctcctacacttcaccgtttaggaattcaagcatttgaaccaaaactt
gttaaaggtaaagcaattagacttcacccattagtaacaacagctttcaacgctgacttt
gatggtgaccaaatggctgtccacttaccaataagtgatgaagcagttgctgaagctaga
gcacttatgttaggttcaaaagcaattcttggaccaaaagatggtaaaccaattgttact
ccaactcaggatatgattttaggtaactactatattactactgaagaaaaaggtgttctt
ggagaaggtactttattttcaaactataaagaagttaaaattgcctatgaaacaaattca
gtttctttaaatgcaattgtagtaattcctgtaagtgaattaaaagataaaaaaatatct
gagaaacacaaagataaattcttaataacaacagttggtaaaatattctttaaccaaatg
tttgttgaagaattcccatgaattgttaattcaaatattaataatgcagaatcagaaatt
gaaaaattcattattgatggaaatattgatatcagaaattacattgaaaatgaatatgaa
attcaacaaccaattaagaaaaaagaattatcatcaattattgaaagatactttaaatta
tttggtgcccaaaaaactgctcaaatgttagataacatgaaagacttaggatttaagttt
tcatcaaaatcaggaacaacaatcagtgcagctgacgttgttgcatatacagaaaaattt
gatgaattcaaagttgctgatgaaaaagtagcacaaattactgaatacttcaatatgggt
atgttaacaagaacagagaaaaaacgtcgtgtaattaacgtttgatcacaagttaaagat
aaaattcaaaatagacttgaagatgttcttaaaaaagatccaaaaaatccagtatttgtt
atggctgattctggagcccgtggtaatgtatctaactttacacagttggtaggtatgagg
ggacttatgaatgaccctaaaggggacattaaagaaattccaattaaatcttcattccgt
gaaggtttaacagtgtcagaatactttatttctactcacggagcaagaaaaggtatggcc
gacgttgccttaaaaacagctgactcaggttacttgacaagaagacttgttgatatttca
caagaaataattgtaactgaagaggattgtaaaacaacaaaaggtttcgatgttcattca
attattgaaacaaaacatgacaacattatcgttcctttaaaagacagacttgttggaaga
tttacatttaacgatgtaattgatgataaaggaaatactattgttgaagcaaatacttta
ataactttaaaattagctgatgaaattatcaaagctggagttgaagaagttcaaataaga
actgtattaacatgtgatacaaaccgtggtgtatgtagaaaatgttatggagtaaactta
gcaacaggagaaatcgttacacttggtgaacctgtaggggtaattgctgctcagtcaatt
ggtgaacctggtactcagctaactatgcgtactttccatactggaggggttgcaggggga
gcagatattactcaaggtcttcctcgtattaaagaattacttgacgttacaaatccaaaa
ggttcaattgcaataatttcacaaattgatggaattgttaaagaagcaagagaagaagat
ggaattataacaattgttgttacatctgatcaagatgaaagaaaatacaaatcacaatat
ggagctattttaagagtaacagaaggtgaagttgtaactcgtggtcaaaaattaacagaa
ggtgcaataaatattaaagaattattagaagttgcaagaattgaagacgttcaaaactac
attttaaaagaagtgcaaaaagtttatcgtctacaaggtattgaaatttctgataaatat
atcgaaattattgttaaacaaatgttaaacaaagttaaaattattgactcaggagaaact
gaattacttccaggtgaagttatttcatcaagaacattcagaagcgaagttaaaaatgca
attatggctggtaaaaaaccacctcttgcaaaacatgttatctttggtattaaaaaagct
ccattggaatcagattcatgattatcaagtgcatcattccaagatacagcaagagtactt
gtaaaagcagttattaaaggaaaagttgataaattagaaggattaaaagaaaacattatg
ttaggaaacttaatcccagctggaactggattaactggtagtgcagatataattcaaaaa
ggtaaagaaacttacgattcagaatattaa
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