Spiroplasma diminutum: SDIMI_v3c03360
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Entry
SDIMI_v3c03360 CDS
T02741
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
sdi
Spiroplasma diminutum
Brite
KEGG Orthology (KO) [BR:
sdi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sdi03016
]
SDIMI_v3c03360 (truB)
Enzymes [BR:
sdi01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
SDIMI_v3c03360 (truB)
Transfer RNA biogenesis [BR:
sdi03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
SDIMI_v3c03360 (truB)
Prokaryotic type
SDIMI_v3c03360 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Motif
Other DBs
NCBI-GeneID:
16854015
NCBI-ProteinID:
AGR42040
UniProt:
S5MJ96
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All DBs
Position
376694..377617
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AA seq
307 aa
AA seq
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MMNDKSGILLVNKPEGITSNDLIQKIKRKFKIKKIGHAGTLDPIATGLMVVLINQATKIS
NYLLSSDKSYIVTMKLFVQTDSQDITGNIVEEESYKKISKGLVKQIVAKYNGYIYDQYPP
IYSAIKVDGKKLYEYARNDEEVVIKPRKVTINSCKLLNFNQKLGTIKLSVGCSKGTYIRS
LVSDFAKDLETIATVSQLERTTSGGLKLADAKTIENLQETDLISMYDALMQNEHPLIEYH
RVRDIKQGKAITLTGINYPIVFIINDKKEVIAIYKHIAHDLYKCQRGLWDEIPFDQLTEA
ERNGYYD
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atgatgaatgacaaatcaggtatacttttagttaataaaccagaaggaataacttcaaat
gatttaatccaaaaaattaaaagaaaatttaaaattaaaaaaattggtcatgctggaact
ttagatccgatagcaactggtttaatggttgttttaattaatcaagctacaaaaatatca
aattatcttttaagtagtgataaaagttatatagtaactatgaaattatttgtacaaaca
gattcacaagatattactggaaatattgtagaagaagagagctataagaaaatctctaaa
ggcttagttaaacaaatagttgctaaatataatggttatatttatgatcaatatccacca
atttattcagctattaaagttgatgggaaaaaattatatgaatatgcaagaaatgatgaa
gaggttgttataaaaccaagaaaagtaactattaattcttgtaagcttttaaattttaat
caaaagttaggaacaataaaacttagtgttgggtgtagtaaaggaacttatattagaagt
ttagtttcagattttgcaaaggatttagaaacaattgctacagtatcacaattagaaaga
acaacatctggtgggcttaaattagctgatgcaaaaactattgaaaacttacaagaaact
gatttaatttcaatgtatgatgcactaatgcaaaacgaacacccattaatcgaatatcat
agagttagagatattaagcagggtaaagcaattactttaacaggtattaattatccaata
gtgtttataattaatgataaaaaagaagtaattgcaatttataaacatattgctcatgac
ctttataagtgtcaaaggggactatgagatgaaataccatttgatcagttaacagaagct
gaaaggaatggatattatgattaa
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