Spiroplasma diminutum: SDIMI_v3c04620
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Entry
SDIMI_v3c04620 CDS
T02741
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
sdi
Spiroplasma diminutum
Pathway
sdi03030
DNA replication
sdi03430
Mismatch repair
sdi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SDIMI_v3c04620 (holA)
03430 Mismatch repair
SDIMI_v3c04620 (holA)
03440 Homologous recombination
SDIMI_v3c04620 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdi03032
]
SDIMI_v3c04620 (holA)
03400 DNA repair and recombination proteins [BR:
sdi03400
]
SDIMI_v3c04620 (holA)
Enzymes [BR:
sdi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SDIMI_v3c04620 (holA)
DNA replication proteins [BR:
sdi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SDIMI_v3c04620 (holA)
DNA repair and recombination proteins [BR:
sdi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SDIMI_v3c04620 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta_C
DNA_pol3_delta
Motif
Other DBs
NCBI-GeneID:
16854489
NCBI-ProteinID:
AGR42166
UniProt:
S5LZY5
LinkDB
All DBs
Position
complement(504735..505688)
Genome browser
AA seq
317 aa
AA seq
DB search
MFFIYSNDNFLIKKQVDKLIQKINLEKEYDIFEYSLIDDAIPSILEEINTYSIFSSKKII
IINDCWFVNESKVKLHKTYDVKFVEQILNSTNNEVEIILTLNSDKFSKKLKIAKLTESNC
KLLKLDEPTVDQKRQIILMKMQSADIEYDLEAIELFIDKLPNDMQVFSNEINKLIVLNKK
IDIPLINEITTKYNSFDTFQLANCFISNDIKTFLKQWSSYMEINNDIYSFLALLANNLIS
LRNILLYRQKRVNNSEIASILSINPYRITKLLEENKLDISQINDKIKVLYLLEKNIKSGI
YDNKIIPEIELLKMFNV
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atgttctttatatattcaaatgataattttttaattaaaaagcaagttgataagttaatt
cagaagattaacttagaaaaagaatatgatatttttgaatattctttaatagatgatgca
attccttctattttagaagaaataaatacatattcaatattttcttctaaaaaaataatt
atcataaatgattgttgattcgtaaatgaaagtaaggtaaaactccataaaacttatgat
gtaaaatttgttgagcagatattgaattcaactaataatgaagttgaaataatacttact
ttaaattctgataaattttcaaaaaaacttaaaattgctaaattaactgaaagtaattgt
aaacttttaaaattagatgaaccaactgttgatcaaaagagacaaattattctaatgaaa
atgcaaagtgcagatattgaatatgatctagaagcaattgaactgtttattgataaactt
ccaaatgacatgcaagtgttttcaaatgaaatcaataagttaatagttttaaacaagaaa
attgatattccattaataaatgaaataactactaaatataatagttttgatacttttcaa
ttagcaaattgttttatttcaaatgatataaagacatttttaaaacaatgatcaagttat
atggaaattaacaatgatatatattcatttttagctttacttgcaaataatttgatatca
cttagaaatattttattatatagacaaaaacgagttaataattctgaaattgcatcaata
ttaagtataaatccttatagaattacaaagctattggaggaaaataaactagatattagt
caaataaatgataaaatcaaagtgttatatttattagaaaagaatataaaaagtggaatt
tacgataataaaataattccagaaattgaactattaaaaatgtttaatgtttaa
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