Spiroplasma diminutum: SDIMI_v3c07540
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Entry
SDIMI_v3c07540 CDS
T02741
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
sdi
Spiroplasma diminutum
Pathway
sdi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sdi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SDIMI_v3c07540 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdi03021
]
SDIMI_v3c07540 (rpoA)
03400 DNA repair and recombination proteins [BR:
sdi03400
]
SDIMI_v3c07540 (rpoA)
Enzymes [BR:
sdi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SDIMI_v3c07540 (rpoA)
Transcription machinery [BR:
sdi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SDIMI_v3c07540 (rpoA)
DNA repair and recombination proteins [BR:
sdi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SDIMI_v3c07540 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_5
Motif
Other DBs
NCBI-GeneID:
16854531
NCBI-ProteinID:
AGR42458
UniProt:
S5MF87
LinkDB
All DBs
Position
complement(840562..841515)
Genome browser
AA seq
317 aa
AA seq
DB search
MKQFSRPEFNLLKEEKNRSYGEFKVEPLERGFGTTLGNAIRRTLLSSTPGAAVYAIKIVG
AAHEFTSIEGIVENVSRIILNLKQLALKIDSKIFEDDEVVELKINSTRVGAITAGDIILP
TGVEVMNPELHICTISDGGVLDLTLFAKNSRGYRTFKDNKKEKLVVDAITIDSNYSPIVK
VAYNVDATKIGKSVDLEKLILEVETDGTVTASDAVATAAKILVEHLQFFVNLNDEINDLN
VIGATNEEDEKELDRLIEDLDFTQRSLNCLKRANINSLRDLVSRTEDDIQEIRNLGRKSL
KEIKDKVVQLGLTFRQE
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaattttcaagaccagaatttaatttattaaaagaagaaaaaaacagaagttat
ggggaatttaaagtagaacctcttgaaagagggttcggaacaacacttggtaatgcaata
agaagaacattactatcttcaacaccaggagcagcagtttatgcaattaaaattgttggt
gcagctcatgaatttacttcaattgaaggaattgttgaaaatgtaagtagaatcatttta
aatctaaaacaattagctttaaaaattgattcaaaaatatttgaagatgatgaagttgtt
gaattaaaaattaattcaacaagagttggagcaatcactgcaggagatattattcttcca
acaggagttgaagtaatgaatccagaattacatatctgtactatatcagatggtggagtt
ttagatttaactttatttgcaaaaaactcaagaggttatagaacatttaaagataacaaa
aaagagaaattagttgtagatgcaattacaattgattctaactattcaccaattgttaaa
gttgcatacaatgttgatgcaacaaaaattggtaaatcagtagacttagaaaaattaatt
ttagaagttgaaactgatggaacagttacagcaagtgatgcagttgcaacagctgcaaaa
atattggttgagcacttacaattctttgtaaacttaaatgatgaaatcaatgatttaaat
gttattggtgctacaaatgaagaagatgaaaaagaattagatcgtttaatcgaagattta
gactttacacaaagaagtttaaattgtttaaaaagagcaaacatcaactcattacgtgat
ttagtttcacgtactgaagatgatattcaagaaattagaaacttgggtagaaaatcatta
aaagaaatcaaagataaagttgttcaattaggattaacttttagacaagagtag
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