Selenomonas dianae: QU667_01165
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Entry
QU667_01165 CDS
T09257
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sdia
Selenomonas dianae
Brite
KEGG Orthology (KO) [BR:
sdia00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sdia03016
]
QU667_01165
Enzymes [BR:
sdia01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
QU667_01165
Transfer RNA biogenesis [BR:
sdia03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
QU667_01165
Prokaryotic type
tRNA splicing ligases
QU667_01165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WLD82625
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All DBs
Position
225633..226844
Genome browser
AA seq
403 aa
AA seq
DB search
MDRMEIRGRCGTAIVYAKVIEDEAVEQIRRMCDYEFTEGASIRIMPDVHWGKGCTIGTTM
TVRDKVVPNLVGVDIGCGMYTVGLGKGEIDLVRFDEAAHFIPSGRNIWDGRQEQFDLLGL
RCYRALKDTKRIARSLGTLGGGNHFIEIDRSADGTNYLVIHTGSRNLGKQVAEYYQNIAI
DLSHGKDELFRARDELIRRYKAEGRRSELQEALKELNRTFQAKAAEIPPDLTFLYGSYLE
DYLHDIEICQNFARKSREVIARVLLERTGLTAGDAFHTIHNYIDVEERILRKGAIAAHAG
ERVLIPINMRDGSILAVGRGDPDWNWSAPHGAGRLMSRKAAKENLSMDEFCKTMAGVYTT
AVNENTLDEAPMAYKALSDIIDVIGDSVDVVEVLKPIYNFKAG
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atggatcgcatggagatacgcggacgctgcggtacggcgattgtatacgcaaaggtgatt
gaggatgaggcggtcgagcagatccgccgtatgtgcgactacgagttcacggagggcgcg
agcatccgcatcatgcccgatgtacactggggcaagggctgtacgatcggtacgacgatg
accgtgcgggacaaggtcgtcccgaacctcgtcggcgtggacatcggctgcggcatgtat
accgtcggcctcggcaagggcgagatcgacctcgtacgctttgatgaggcggcgcacttc
atcccgtcggggcgaaatatctgggatgggcggcaggagcaatttgacctcctcgggctg
cgctgctaccgcgccctcaaggatacaaagcgcatcgcacgcagccttggcacactcggc
ggcggcaatcacttcatcgagatcgaccgcagcgcggacggtacgaactacctcgtcatc
cacacgggcagccgcaacctcggcaagcaggtcgcggagtactaccagaacattgccatc
gacctctcgcacggcaaggacgagctcttccgcgcacgcgacgaactcatccgacgctat
aaggcggaggggaggcgcagcgaactgcaggaggcgctcaaggagctgaatcgcacattt
caggcaaaggcggcggagatccccccggatctcacgttcctctacggcagctacctcgaa
gactatctgcacgacatcgagatctgccagaacttcgcgcggaagagccgtgaggtcatc
gcgcgtgtcctcctcgaacggacggggctcacggcgggcgacgcattccacaccattcac
aactacatcgacgtggaggagcggattctccgcaagggcgcaatcgcggcgcacgcaggc
gagcgtgtcctcatcccgatcaatatgcgcgacggcagcatcctcgccgtcgggcgcggc
gatccggactggaactggtcggctccgcatggggcggggcggctcatgtcacgcaaggct
gcaaaggaaaacctctccatggatgagttttgcaaaacaatggcaggtgtctatacaaca
gccgtcaacgagaatacgctcgacgaggcaccgatggcgtacaaggcactctcggacatc
atcgacgtgatcggggattccgtggacgtggttgaggtgctgaagcccatctataacttc
aaagcggggtga
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