Selenomonas dianae: QU667_03465
Help
Entry
QU667_03465 CDS
T09257
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sdia
Selenomonas dianae
Pathway
sdia03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sdia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QU667_03465 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdia03400
]
QU667_03465 (mfd)
Enzymes [BR:
sdia01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QU667_03465 (mfd)
DNA repair and recombination proteins [BR:
sdia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QU667_03465 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
AAA_30
AAA_22
AAA_16
Motif
Other DBs
NCBI-ProteinID:
WLD83038
LinkDB
All DBs
Position
724244..727528
Genome browser
AA seq
1094 aa
AA seq
DB search
MNTFFSVLRADCAVRQLAEALGAAPQQILAHGFAGSMKHAAIAAAYDEHPRPLAIVTSGR
EALRGWQEDLAALLPEADVYELPELDRMDFAAPGAAKGLERSAQRMNILARLLRHEPIIV
LADIGAAAQKGLSTAEFSRAALSLRLGEKLPRETLLERLAALGYEHAAEVEHAGHFSVRG
GIVDIFPINALSPIRVEFFDTEIDSMREYDPLTKRSIKNIGTASVMPLRAADDEGEACFL
TYLGTAGVTLFDEPSRLISALADAVQEDEVRAARLFSWEDLAAAGAAGHEVFAALMSRSF
PSCTPTALIGFEMVPMTAFQRQFALLESELRRYLADGTQVLILAGGVERANLVRDMLTGW
KIPAVAVRKEGAAAKKAVLVTSGALRAGFELSSAHVAVLTEQDIFGRHKAKLRRAPSAGE
RIRHFREIAPGDYVVHVSHGIGKYLGVDTLEVAGVHRDYLRILYGGDDKLFVPTDQVGLL
QKYIGAEGAAPRLHRMGTADWARARAKAQKSVEDIADHLLELYAARQLARGHAFTPDDAM
QREFEEAFPYEETEDQLRAIAEIKRDMESDKPMDRLLCGDVGFGKTEVAVRAAFKAAMDG
YQVAVLVPTTVLAQQHYQTFAARFADFAPKVDVVCRFRSLREQAATLRDVERGRVDILIG
THAILNRKRVRFQKLGLLIVDEEQRFGVTQKEKIKEFAAGVDVLTLSATPIPRTLHMSLA
GARDMSIIETAPAERLPVQSYVVESSDAMMRGAIERELARGGQIYFIYNRVESIDRMREH
LLRLVPEARIASAHGQMNEDILEQVMMDFYEGHYDILLATSIIENGIDVANANTIIIYDA
DRFGLSQLYQMRGRVGRSATMAFAYFTYRRDKVLSETAEKRLQAMKEFARLGSGFKIAMR
DLEIRGAGSLLGAQQHGHIAGVGFEMYVKLLEEAVARKKGEAPAPPPVETVIDLPVEAYI
DGGYIDDAMHKIEIYQKIAAVRTNEDLDALLDELIDRFGEPTKPVLALLDIARIKNYART
FGARSVAAKGDALELVLPEGGKLPLPALMRLDRAYGRRVGPLPEGDGYRIRLLPKERGEI
LDTALEIVKMVSGE
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atgaatacatttttttccgtgctgcgtgcggattgtgccgtgcgtcagctggcagaggca
ctcggggctgcgccgcagcagattctggcgcatggctttgccggttcgatgaaacacgcc
gctattgcagcagcctatgacgaacatccgcgcccgctcgccattgtgacgagcgggcgc
gaggcgctgcgcggatggcaggaggatctggcggcacttctgccggaggcggatgtctac
gagctgccggaactggatcgcatggactttgccgcgcccggcgcagcgaaggggctcgaa
cgctcggcacagcgcatgaacattctcgcacgcctgctgcgccatgagccgatcattgtg
cttgcggacatcggggcggcggcgcagaaggggctgagtacggcggagttttcgcgggcg
gcactctctttgcgcctcggggagaaacttccgcgcgagacgctactcgaacgccttgca
gcgctgggctacgagcacgccgcagaggtggagcacgcagggcatttcagcgtgcgcggc
gggattgtcgacatcttccccatcaatgcgctctctccgattcgcgtggagttcttcgat
acggagatcgactccatgcgcgagtacgatcctctgaccaaacgctccatcaagaatatt
ggcacggcttccgtcatgccgctgcgtgcagcggacgacgagggggaggcgtgctttttg
acgtatctcgggacggcgggggtgacgctctttgacgagccgtcccgtcttatttcggca
cttgcggatgccgtacaagaggatgaggtgcgtgcggcccgtctgttctcatgggaggat
ctcgctgcagcgggagcggcagggcatgaagtctttgccgcgctcatgagccgttccttt
ccctcctgtacccccactgcgctgatcggctttgaaatggtgccaatgacggcatttcag
cgtcaatttgccctgcttgagagtgagctgcgccgctatcttgcggatgggacgcaggta
cttattctcgcgggcggcgtggagcgggcgaatctcgtgcgcgatatgctgacgggatgg
aagattccggctgttgcggtgcgcaaggagggcgcggcggcaaaaaaagcagtgctcgtt
acatcgggggcgctgcgtgcgggatttgaactgagcagtgcgcacgttgctgtactcaca
gagcaggatatctttgggcggcataaggcaaagctgcgccgagcgccgtctgcgggggaa
cgcatccggcactttcgtgagattgcgccgggtgactacgttgttcatgtatcacatggc
atcgggaagtatctcggcgtggatacgcttgaggtggcaggggttcatcgcgactatctg
cgcatcctgtacggtggggacgacaagctctttgtgccgacggatcaggtcgggcttttg
cagaaatacatcggcgcggagggggctgcgccgcgtctgcaccgcatggggacggcagac
tgggcgcgtgcgcgtgcgaaggcgcagaagtctgtggaggacatcgccgatcatctgctt
gagctctatgccgcgcggcagcttgcgcgggggcacgcctttacgcccgacgacgccatg
cagcgcgagtttgaggaggcgtttccctacgaggaaacggaggatcagctgcgcgccatt
gctgagatcaagcgtgatatggagagcgacaagcccatggatcgcctgctctgcggcgac
gttggcttcggcaagacggaggtcgctgtgcgggcggcattcaaggcggcgatggacggt
tatcaggttgctgtgctcgtgccgacgaccgtgcttgcccagcagcactaccagaccttt
gccgcacggtttgcagactttgcgccgaaggtggatgtggtctgccgttttcgttcgttg
cgggagcaggcggcgacgctgcgcgatgtggagcgggggcgcgtggacatcctcatcggt
acacacgccattctcaaccgaaagcgtgtgcggttccaaaagctcgggcttctgatcgtg
gatgaggaacagcgttttggtgtcacgcagaaagaaaagatcaaggaatttgcggcgggg
gtcgatgtgctgacgctctcggcgacaccgatcccgcgcacgctgcatatgtcgctggca
ggggcacgcgatatgagcatcattgaaaccgcacctgccgagcgtctgcccgtgcagtcc
tatgtcgtggagagcagcgatgcgatgatgcgcggcgcgattgagcgtgaacttgcgcgg
ggcgggcagatctatttcatctacaaccgcgtggagagcattgaccgtatgcgcgagcat
ttgctccgcctcgtccccgaggcgcggattgcctcggcacatggacagatgaacgaggat
atattggagcaggtcatgatggacttctacgaggggcattatgacatcctgctcgcaacg
agcatcatcgagaacggcattgacgttgcgaatgcgaatacgatcattatctacgatgcc
gaccgcttcggcctctcgcagctctatcagatgcgcgggcgcgtggggcgttcggcaacg
atggcattcgcctatttcacctaccgccgcgacaaggtgctcagtgaaacggcggagaaa
cgccttcaggcgatgaaggagttcgcccggctcggctcgggatttaagatcgccatgcgc
gaccttgagatccgcggcgcgggcagcctcctcggtgcacagcagcacggacatatcgca
ggggtcggcttcgagatgtatgtgaagctgctcgaagaagccgtggcacgcaaaaagggg
gaggcacctgcgccgccgcccgtcgagacggtcattgatctgcctgtggaggcatatatc
gacggcggctacatcgacgatgcgatgcacaagatcgagatctaccagaagatcgccgct
gtgcggacgaacgaggatctggatgcgctgctcgacgagctgatcgaccgcttcggcgaa
ccgacaaagcccgtgctcgcgctccttgacattgcacgcatcaagaactatgcgcgcaca
tttggcgcacgcagcgttgcggcaaagggggacgcgttggaactcgtgctgcccgagggc
gggaagttgccgctgccggcgctcatgcgtctggatcgtgcctatggacggcgcgtcgga
cctctgcccgagggggatggctaccgcatccgacttttgccgaaggagcgcggggagatc
ttggacacggcgcttgaaattgtaaagatggtgagtggagagtga
DBGET
integrated database retrieval system
