Selenomonas dianae: QU667_10200
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Entry
QU667_10200 CDS
T09257
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sdia
Selenomonas dianae
Pathway
sdia03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sdia00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
QU667_10200 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdia03021
]
QU667_10200 (rpoC)
03400 DNA repair and recombination proteins [BR:
sdia03400
]
QU667_10200 (rpoC)
Enzymes [BR:
sdia01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
QU667_10200 (rpoC)
Transcription machinery [BR:
sdia03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
QU667_10200 (rpoC)
DNA repair and recombination proteins [BR:
sdia03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
QU667_10200 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
WLD83565
LinkDB
All DBs
Position
complement(2093518..2097516)
Genome browser
AA seq
1332 aa
AA seq
DB search
MRIGLASPDKIRAWSYGEVKKPETINYRTLKPERDGLFCERIFGPTRDWECHCGKYKRIR
YKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDISPRSLEKVL
YFAYYIVIDAGETDLKKKELLSEREYHDALEKYGNTFRVGMGAEAIKELLEELDLEKMSE
QLRSDVRTTSGQKKVRAIRRLEVVEAFRKSGNRPSWMIMDVVPVIPPDLRPMVQLDGGRF
ATSDLNDLYRRVINRNNRLRRLLDLGAPDIIVRNEKRMLQEAVDALIDNGRRGRPVTGPG
NRALKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLPKEMALELFKPF
VMKKLQADGAAHNIKSAKRMVERARPEVWDVLEDVIKEHPVLLNRAPTLHRLGIQAFEPV
LTEGRALKLHPLACTAYNADFDGDQMAIHLPLSAEAQTEARVLMLAANHILAPKDGKPII
VPSQDMVLGSYYLTKVRPGAKGEGKVFTGIAEALLAYQEKVLDLQAEIRVQVAGYGLVRS
SLGRLIFSEILPEELRHYRQDTETGEWSLGVLMNKKELGKLVANCYDHFGATKTAEVIDN
VKNLGYHYACIAGMTVAVSDVIVPPKKKEIIGETQGQVNKVERQYARGLITEDERYKKVV
QLWTKATDDVADAMMDNMDPFNPIFMMADSGARGNKQQMRQLAGMRGLMADPSGKIIDLP
ITANFREGLTVSDYFISSHGARKGLADTALRTADSGYLTRRLVDVAQDVIVREEDCDVSA
INLMQIRARLAESAFDALELLVESLAGRLLAMAIYDPETKDVLYPQDTVLDDEVLETIGE
RDIREIMVRGSSVSVEGVVSNAMVTESITLGEPDAKKRKKARAAIVRELSGKEVVRDAAL
DDGTMLAAEGDLLTDKMVEAIIDSELHELHIRNNNVRGIEVEAITEGTGVIESLADRIVG
RVLAEDIVDEATGEVIARINDPVDEALAKRIEGMRKRVSIRSVLTCKSQFGVCMKCYGRD
LANQAEVEIGEAVGIIAAQSIGEPGTQLTMRTFHSGGVAGDDITQGLPRVEELFEARKPK
HNAIIAENEGVAHIDDTGKGMRTVTITPEGGVPREYAVPFGARMAVRDGMEMKIGDKITE
GSVNPHDILRVCGLQATQRYLVYEVQKVYKSQGVEINDKHIEVMVRQMLHKVKIEESGTT
EFLPGEYIEINAFEAANTKAIEEDGEPAVAKPILLGITKASLATDSFLSAASFQETTRVL
TDAAIKGKIDPLVGLKENVIIGKLIPAGTGMTRYRNLEIVDFAPQVADESEQETVEEVHE
EVDLSRLEQLSS
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atgcggatcggactcgcttcccccgataaaattcgtgcgtggtcgtacggcgaggtaaag
aagcccgagaccatcaactaccgcacgctcaaacccgagcgcgacggtctgttctgcgag
cgcatcttcggcccgacgcgcgactgggagtgccactgcggcaagtacaagcgcatccgc
tacaagggggtcgtctgcgaccgctgcggtgtcgaggtgacgcgtgcgaaggtgcgccgt
gagcgcatggggcacatcgagcttgctgcgcccgtctcgcacatctggtatttcaagggc
atcccgagccgcatggggctcatcctcgatatatccccgcgttcgctcgaaaaagtcctg
tacttcgcctactacatcgtcattgatgcgggcgaaaccgacctcaagaaaaaagaactc
ctctccgagcgcgagtatcacgatgcgctggagaagtatggcaatacgttccgcgtcggc
atgggcgcggaggcgatcaaggaactgctcgaagagctcgatctcgaaaagatgagcgag
cagctccgcagcgacgtgcgtacgacctccggacagaagaaggtgcgtgcgatccgccgt
ctggaggtggtcgaggcgttccggaaatccggcaacagaccttcgtggatgattatggat
gtcgtgccggtcattccgcctgatctgcgcccgatggtgcagctcgacggcggccgtttc
gcgacctccgacctcaacgatctctatcgccgtgtcatcaaccgcaacaaccgtctgcgc
cgtctgctcgatctcggtgcgcccgacatcatcgtgcgcaacgagaagcggatgctgcag
gaggcggtggacgcgctcatcgacaacggccgccgcggccgccccgtcacgggacccggc
aaccgcgccctaaagtccctctcggatatgctcaagggcaagcagggtcgtttccgtcag
aacctcctcggcaagcgcgtcgactactcggggcgctccgttatcgtcgtcggccccgag
ctgaaactgcatcagtgcggactgccgaaggaaatggcgctcgaactcttcaagccgttt
gtcatgaagaaactccaggcggacggcgcggcgcacaacatcaagtcggcaaagcgcatg
gtggagcgtgcgcgtcccgaggtctgggacgtgctggaggatgtcatcaaggagcatccc
gtgctgctcaaccgcgcaccgacgctccatcgtctcggcattcaggcattcgagcctgtt
ctcaccgagggacgtgcgctcaagctgcaccctctggcgtgtacggcgtacaacgcagac
tttgacggcgaccagatggcgatccatctgccgctgtcggcagaggcgcagaccgaggcg
cgcgtgctcatgctcgcggcgaaccacatccttgcgccgaaggacggcaagcccatcatc
gtcccctcacaggacatggtgctcggctcgtactacctcacgaaggtgcggcccggtgca
aagggcgagggcaaggtgttcaccggcattgcggaggccctgctcgcctatcaggagaag
gtgcttgacctgcaggcggagatccgcgtacaggtggcgggctacggcctcgtccgcagt
tcgctcggccgcctcattttcagtgagatcctgcccgaggagctccgccattatcgacag
gatacggaaacgggggagtggagtctcggcgttctcatgaacaagaaggagctcggcaag
ctcgtcgcgaactgctacgatcatttcggcgcgaccaagaccgccgaggtcatcgacaat
gtgaaaaatctcggctaccactacgcctgcatcgcgggcatgacggtcgccgtctccgat
gtcattgtgccgccgaagaagaaggagatcatcggagagacacagggacaggtcaacaag
gttgagcgccagtatgcgcgtggtctgatcaccgaggatgaacgctacaaaaaagtcgtt
cagctctggacgaaggcgacggacgatgtcgcggacgcgatgatggacaacatggatccg
ttcaaccccatcttcatgatggcagactcgggcgcacgcggcaacaagcagcagatgcgc
cagctcgcggggatgcgcggactcatggcagacccgtcgggcaagatcatcgacctgccg
atcacggcgaatttccgcgaggggctcaccgtttccgactacttcatctcctcccacggc
gcacgcaaggggcttgccgatacggcgctccgcacggcggactcgggctatctgacgcgc
cgccttgtcgatgtggcacaggatgtcatcgtccgcgaggaggactgcgatgtctccgcg
atcaacctcatgcagattcgcgcacggctcgcggagtccgcatttgacgcactcgaactc
ctcgttgagagccttgcggggcggcttctcgctatggcgatctacgatcccgagacgaag
gatgttctctatccgcaggacaccgttcttgacgatgaagtccttgagaccatcggcgag
cgcgacatccgcgagatcatggtgcgcggctcctctgtgagcgtggagggcgtcgtcagc
aatgcaatggtcacggagagcatcacactcggcgagccggacgcaaagaagcgcaaaaag
gcacgcgcagcgattgtccgcgaactcagcggcaaggaagtcgtgcgcgatgccgctctg
gacgacggcacgatgcttgccgccgagggcgatctgctcacggacaagatggtggaagcc
atcatcgactcggaactgcacgaactccacatccgcaacaacaacgtgcgtggcattgag
gtcgaggcaatcaccgagggcacgggtgtcatcgagtcgcttgccgaccgcatcgtcggc
cgcgtgcttgccgaggacatcgtggacgaggcgacgggcgaggtgatcgcccggatcaac
gaccccgtggacgaggcactggcgaagcgcatcgaggggatgcgtaaacgcgtatccatc
cgcagcgtcctcacgtgtaaatcgcagttcggcgtctgcatgaaatgctacgggcgcgac
ctcgccaatcaggcggaagtcgagatcggcgaggcggtcggcatcatcgccgcgcagtcc
atcggcgagccgggcacacagctcaccatgcgtacgttccactcgggcggcgttgcgggc
gacgatattacgcagggtctgccgcgcgtcgaggaactctttgaggcgcgcaaacccaag
cacaacgccatcatcgcagagaacgagggcgtcgcccacatcgacgacaccggcaagggg
atgcgtacggtcacgatcacgcccgagggcggcgtaccgcgtgagtacgccgtaccgttc
ggtgcacgcatggcggtgcgcgacgggatggagatgaagatcggcgacaagatcaccgag
ggctcggtcaacccgcacgacatcctgcgcgtctgcggtctgcaggcgacccagcgttac
ctcgtctacgaggtgcagaaggtctacaagtcgcagggtgttgagatcaacgacaagcac
atcgaggtcatggtgcggcagatgctgcacaaggtcaagatcgaggagtcgggcacgaca
gagttcctgcccggtgaatacatcgagatcaatgcgttcgaggcggcgaataccaaggca
atcgaggaggacggcgagcccgccgtggcgaagcccatcctgctcggcatcacgaaggca
tcgctcgcgacggactccttcctctcggcggcatcgttccaggagaccacgcgcgtcctc
acggatgcggcaatcaaggggaagatcgatccgctcgtcgggctgaaggagaacgtcatc
atcggcaagctcatccccgcaggcacgggcatgacccgctaccgcaacctcgaaattgtc
gattttgcgccgcaggtcgcagacgagtccgagcaggagaccgtcgaggaagttcacgag
gaggtcgacctctcgcggctggagcagctgagcagctga
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integrated database retrieval system
