Sulfurimonas diazotrophicus: WCY31_02000
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Entry
WCY31_02000 CDS
T11008
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sdiz Sulfurimonas diazotrophicus
Pathway
sdiz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sdiz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
WCY31_02000 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdiz03021
]
WCY31_02000 (rpoC)
03400 DNA repair and recombination proteins [BR:
sdiz03400
]
WCY31_02000 (rpoC)
Enzymes [BR:
sdiz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
WCY31_02000 (rpoC)
Transcription machinery [BR:
sdiz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
WCY31_02000 (rpoC)
DNA repair and recombination proteins [BR:
sdiz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
WCY31_02000 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Hac8_like_N
Motif
Other DBs
NCBI-ProteinID:
XAU15480
UniProt:
A0ABZ3HAD0
LinkDB
All DBs
Position
377766..382274
Genome browser
AA seq
1502 aa
AA seq
DB search
MSKLVPIEVTEENRPKDIKQLQFRLASPEKILSWSHGEVKKPETINYRTLKPERDGLFCA
KIFGPVRDYECLCGKYKKMRYKGVVCEKCGVEVTTSKVRRTRMGHIDLVTPVAHIWYVSS
LPSRIGTLLGVKMKDLERVLYYEAYIVKSGGEAFYDAEQSAPVLKYDVLNEEQYRTLNQR
YSESGFVAQMGGEVIRDLLDDIDLVELFSVLKEEMEGTRSEAKRKTIVKRLKVIESFLNS
GNNPAWMMLSVLPVLPPDLRPLVSLDGGKFAVSDVNDLYRRVINRNQRLKRLIELEAPEI
IVRNEKRMLQESVDALFDNGRRANAVKGANKRPLKSLSEVIKGKQGRFRQNLLGKRVDFS
GRSVIVVGPDLKMDQCGLPKKMALELFKPHLIAKLEDKGYATTVKAAKKMIEDQTNEVWE
CLSEIVEGYPIMLNRAPTLHKLSIQAFHPRLIDGKAIQLHPLVCAAFNADFDGDQMAVHV
PLSAEAIAEAKVLMLSSMNILLPASGKAIATPSQDMVLGIYYISLEKNGVVGSNKLFANV
DEIRIALEQGALDLHARIRTRVDGRMITTTVGRLLIKEILPDFVPVDLWNRVMKKKAINA
LVDYVQKHGGIAVTAGFLDRLKNLGFKHATEAGVSISVDDVIVPEEKPELIAQSKAKVKE
IQKQYEAGLLTEQERYNKIIDVWTDVNNTLAGDMMHLIENDKAGFNSIYMMADSGARGSA
AQIRQLAGMRGLMAKPDGSIIETPIISNFKEGLNVLEYFISTHGARKGLADTALKTANAG
YLTRKLVDVAQNVKIVEDDCGSHEGIEITDISIGNEMIEPLEDRIYGRVLAEDAIDPITN
EILYPEGELIDEIKASKIVEAGIKSVHIRTPATCKSEGGVCALCYGKNLGTGELVRKGEA
VGIIAAQSIGEPGTQLTLRTFHVGGTASSTREERQVTATKKGFIRYYNLKTYKNQEGKNI
VANRRNAGVLLVEPKIKAPFDGTIDIQSIHDEVLISVSNGEQTQRYTLRKTEVARPNELA
GVSGKIEGKFYLPYESGATVTAHESIVETIRDGWNVPNRIPYASELLVDDGAPVTQRVEA
GAKGTVKFFLLKGDYLERYDAISKGYEVTEKGLFAVVVDADDREANRHYIARGSIVDIED
DAAAEATTVIAHAATAESLVIAEWDPYSNPIISEAAGTVKFEDIIPGVTASEQFDELTGK
TRLMINEYIAPEYKPAIVLATETGEIIRYAVEPKTAVFAQDGAEVNVADILAKTPKALQK
SRDITGGLPRVSELFEARKPKDVALIAEIDGVVSFGKPLRGKERIIITGENGIMKEYFVD
KNQNALVHPGEFVHAGERLSDGMVSSHEILRILGVKALYNYLVSEVQQVYRRQGVNIADK
HIEVIFTQMIRQVKIVKSGDTKFIQGDLVSKNRFKEENEKILRLGGEPAIAEPFLVGITR
ASVSADSIISAASFQDTTKVLTEAAVSAKIDDLTDMKENVIIGRTIPAGTGMYKDYTIDF
DA
NT seq
4509 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaattagtgccgattgaagtaacggaagagaatcgcccgaaggacattaaacag
ctgcagttccgcctggcgagcccggagaagatcctctcctggagccacggcgaagtcaaa
aagccggagacaatcaactaccgtaccctgaaaccggagcgcgacggcctcttctgtgcc
aagatcttcggtccggtccgcgattacgagtgtctctgcggcaaatacaagaagatgcgc
tacaagggcgtcgtctgtgagaagtgtggcgttgaagtcacaacgtcaaaagtacgccgt
acccgtatgggtcacatcgatctggtcacgccggtagcgcacatctggtatgtcagctcc
ctgccgagccgtatcggtacgctcctgggtgtcaaaatgaaagacctcgagcgtgtactc
tactacgaggcgtacatcgtcaaaagcggcggtgaagcgttctatgacgcggagcagagc
gccccggttctgaagtacgacgtcctcaacgaagagcagtaccgtacccttaaccagcgc
tacagtgagagcggtttcgttgcccagatgggcggcgaggtcatccgtgacctgctcgac
gacatcgacctggttgaactcttctccgtcctcaaagaggagatggaggggacccgttcc
gaagcgaagcgcaaaacgatcgtcaagcgtctgaaggtcatcgaatccttcctgaactcc
ggaaacaacccggcatggatgatgctttcggttctgccggtcctgccgccggatctgcgt
ccgctggtttccctggacgggggcaagttcgccgtctccgacgtcaacgacctctaccgc
cgtgttatcaaccgtaaccagcgtctgaagcgtctgatcgagctcgaagcgccggagatc
atcgtgcgcaacgagaagcgtatgcttcaggaatccgttgatgccctcttcgacaacggc
cgtcgtgccaatgccgtcaagggtgcgaacaagcgtccgctgaaatccctctccgaggtt
atcaaaggtaagcagggacgtttccgtcagaacctgctcggtaagcgcgtcgacttctcc
ggccgttccgtcatcgtcgtcggtccggacctcaagatggaccagtgcggtctgccgaaa
aagatggcccttgagctcttcaagccgcacctgatcgcgaagctcgaagacaaagggtac
gcgacgaccgtcaaggcggccaaaaagatgatcgaagaccagactaacgaagtctgggag
tgcctctcagagatcgttgaaggttacccgatcatgctcaaccgtgcgccgacgctgcac
aaactgtctattcaggccttccacccgcgcctgatcgacggtaaagcgatccagctgcac
ccgctcgtctgtgcggccttcaacgccgacttcgacggtgaccagatggcggtccacgtg
ccgctctccgccgaggcgatcgccgaggcgaaggtcctgatgctctcatccatgaacatc
ctgctgccggcgtccggtaaagcgatcgcgacaccgtcacaggatatggtcctcgggatc
tactatatctccctggagaagaacggcgtcgtcggttcgaacaaactctttgccaatgtc
gacgagatccgtatcgcgctggagcagggtgcgcttgatctgcacgcccgcatccgtacc
cgtgtcgacggacgcatgattaccacgacggtcggccgtctccttatcaaagagatcctg
cctgacttcgtcccggtcgatctgtggaaccgcgtcatgaagaaaaaggcgatcaacgcc
ctggtcgactatgtccagaagcatggtggtatcgccgtcacagccggtttccttgaccgc
ctcaaaaacctcggtttcaaacatgcgaccgaggcgggtgtttccatctccgtcgacgac
gttatcgtccccgaagagaaaccggagctgatcgcgcagtccaaggcgaaagtcaaagag
atccagaagcagtatgaagcgggccttctgaccgagcaggagcgttacaacaagattatc
gacgtctggaccgacgtcaacaatacgcttgcgggcgatatgatgcatctgattgagaac
gacaaagcgggcttcaactccatctacatgatggctgactccggggcgcggggttctgcg
gcgcagatccgccagctggccggtatgcgtggtctgatggcgaagccggacggctcgatc
attgaaacgccgattatctcgaactttaaagagggtctgaacgtcctcgagtacttcatt
tcgacccacggtgcccgtaaaggtctcgcggataccgcgctcaagacggcaaatgccggt
tacctgacgcgtaaactcgtcgacgtcgcgcagaacgtgaagatcgtcgaggatgactgt
ggttcccacgaggggatcgagatcacggatatctccatcggtaacgaaatgatcgaaccg
ctcgaagaccgtatctacggccgcgtactcgccgaagacgcgatcgacccgatcaccaac
gagatcctctaccccgagggcgagctgatcgacgagatcaaggcgagcaagatcgttgaa
gcgggcatcaagtccgtgcatatccgtacaccggcgacctgtaagtccgaaggcggcgtc
tgtgcgctctgttacggtaaaaacctcggaacgggcgaactggtccgcaaaggggaagcc
gtcggtatcatcgcggcgcagtcgatcggggaaccggggacgcagctgaccctgcgtacc
ttccacgtcggcggtacggcgtccagtacccgtgaagagcgccaggtcacggcgacgaag
aaaggtttcatccgttactacaacctgaaaacctataagaaccaggaaggcaagaacatc
gttgccaaccgccgtaatgcgggtgtgctcctggtcgagccgaagatcaaagcgccgttc
gacggtacgatcgacattcagtcgatccacgacgaagtgcttatcagcgtgagcaacggt
gagcagacacagcgttacaccctgcgtaagaccgaggttgcccgtccgaacgaactggcc
ggcgtcagcggtaagatcgaagggaaattctacctgccgtacgagagcggcgcgacggtg
acggcgcacgagtcgatcgtcgaaacgatccgcgacggttggaacgttccgaaccgtatc
ccgtacgcttccgagctgctcgtcgatgacggtgcgccggtcacacagcgtgtcgaagcg
ggtgcgaaaggcaccgtgaagttcttcctgctcaaaggggactacctcgagcgctacgat
gcgatcagcaagggctacgaagtcaccgagaaggggctcttcgccgtcgtcgtcgatgcc
gacgaccgtgaagcgaaccgccactacatcgcccgcggctccatcgtcgatatcgaggac
gatgcggctgcggaggccaccacggtcatcgcacacgcggcgacggcggaatccctcgtc
atcgccgagtgggacccgtactccaacccgatcatctccgaagcggccggtacggtcaag
ttcgaagatatcatcccgggtgtgacggcgtccgagcagttcgacgaactgacgggtaaa
acgcgtctgatgatcaacgaatacatcgcgccggaatacaagccggcgatcgtgctggcg
acggaaaccggcgagatcatccgctacgcggttgaaccgaagacggcggtcttcgcccag
gacggtgcggaggtcaacgtcgccgacatcctggcgaagacaccgaaagcgctccagaag
tcccgggacattaccgggggtcttccgcgggtttccgagctcttcgaagcgcgtaaaccg
aaagatgtcgcccttatcgccgagatcgacggtgtcgtcagcttcggtaagccgctgcgc
ggcaaggagcgtatcatcattaccggtgaaaacggcatcatgaaagagtactttgtcgac
aagaaccagaacgccctggtccacccgggcgaattcgttcacgccggcgaacgcctctcc
gacggtatggtttcgagccacgagattctgcgtatcctcggtgtcaaggcgctgtacaac
tacctggtcagtgaagtccagcaggtctaccgccgccagggggttaacatcgcggacaaa
cacatcgaggtcatctttacccagatgatccgccaggtcaagattgtcaagtccggcgat
acgaagttcattcagggcgacctcgtctcgaagaaccgtttcaaggaagagaacgagaag
atcctgcgcctgggcggcgagccggcgatcgccgagccgttcctggtcggtatcacccgt
gcctccgtcagtgcggactcgatcatctccgcggcgtccttccaggatacgaccaaggtc
ctgaccgaagcggcggtctccgcgaagatcgacgacctgaccgatatgaaagagaacgtc
atcatcggtcgtaccatcccggccggtaccggtatgtacaaagactacacgatcgacttc
gacgcgtaa
DBGET
integrated database retrieval system
