Sulfurimonas diazotrophicus: WCY31_04020
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Entry
WCY31_04020 CDS
T11008
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
sdiz Sulfurimonas diazotrophicus
Brite
KEGG Orthology (KO) [BR:
sdiz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sdiz03009
]
WCY31_04020 (dbpA)
Enzymes [BR:
sdiz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
WCY31_04020 (dbpA)
Ribosome biogenesis [BR:
sdiz03009
]
Prokaryotic type
rRNA helicases
WCY31_04020 (dbpA)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
YlmH_RBD
Motif
Other DBs
NCBI-ProteinID:
XAU15874
LinkDB
All DBs
Position
complement(781119..782498)
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AA seq
459 aa
AA seq
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MTSKPFTTLPLPAALQQNLDALGYRRMTPVQEQSLPALLEGKDAIVRAQTGSGKTLAFGI
GTIMKLAENESDVQGLILCPTRELAEQVAGELRRLSRHRPNIKILTLCGGVPLAPQRDSL
QYGAHIVVGTPGRVLDHLGKKTLSLSKVHTLVLDEADRMLDLGFHDAIMKIASHLTSSRQ
SLLFSATFPETIAAIAAALLRDPVTVEVENSASEVTLTQHFFKVKGEKVGTLVRLLGHYS
PESAVVFCNTKAGCDALAIALAEQGYDAAVLHGDLRQGERTEVLTRFALGGIRLLIATDV
AARGLDIKALGAVINFDLPEKPETYLHRVGRTARAGSTGMALTLFTPKQQPAAERLAEAG
ETPFSPEDASGFPPADPVRFLPDFAILRIDGGRKQKLRPGDLLGALCASGGIDGKAVGNI
AVHDTLAYVAVEQGVADTALQQLNRGKIKGKKFRVRIAQ
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
gtgacctccaaaccttttaccactcttcccctgcccgcagcactgcagcagaacctggat
gccctaggctaccgccgtatgacccccgtacaggaacagagccttccggcgctgcttgaa
ggcaaagacgccatcgtccgcgcgcaaaccggcagcggtaagaccctcgccttcgggatc
ggcacgatcatgaagctcgcagagaatgaatcggatgttcaggggcttattctctgtccg
acgcgggagctggccgaacaggtggccggagagctgcgacgcctctcccgccaccggccg
aacatcaaaattctgacgctctgcggcggggtgccgctggcaccgcagcgcgactcgctg
cagtacggagcgcacatcgtcgtgggcaccccggggcgggtcctcgatcacctggggaaa
aaaacgctttcgctctcgaaggtgcataccctggtactcgacgaggccgacaggatgctg
gacctgggctttcacgacgccatcatgaagatcgcttcgcacctgacttcctcccgccag
agcctgctcttttcggccaccttccccgagacgatcgccgccatcgctgccgcgctgctg
cgcgatcctgtgactgtggaggtcgagaatagcgcttccgaggtgacgctcacacagcat
ttcttcaaggtaaaaggggagaaggtcgggacgctcgtgcgtcttctcggtcattacagc
cccgaatctgccgtcgttttctgcaatacgaaggcgggctgcgatgcgttggcgatcgcc
cttgccgagcagggctacgacgcggccgtcctacacggcgacctgcgccagggcgaacgc
accgaggtcctgacgcgttttgccctcggcgggatccggctgctcatcgcgacggacgtc
gccgcgcggggactcgatatcaaggcgctgggcgcggtcatcaatttcgacctgcccgaa
aagcccgaaacctacctccaccgcgtcggccgtacggcccgggcgggcagcaccggcatg
gccctgacgctctttacccccaagcagcagccggccgccgaacggctggccgaagccggc
gagacgcctttcagccccgaagacgcctccggtttccccccggctgaccccgtacgtttt
ctccccgatttcgccatcctgcggatcgacggcggccggaagcagaaactgcgccccggc
gacctgctcggtgccctctgtgcctccggcggcatcgacggtaaagcggtgggcaacatc
gccgtccatgacaccctggcctacgtcgctgtcgagcagggtgtcgccgacaccgccctg
cagcagctgaaccgcggcaagatcaagggcaaaaagttccgcgtgaggatcgcgcagtga
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