Sulfurimonas diazotrophicus: WCY31_06215
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Entry
WCY31_06215 CDS
T11008
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
sdiz Sulfurimonas diazotrophicus
Pathway
sdiz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sdiz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
WCY31_06215 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdiz03021
]
WCY31_06215 (rpoD)
Transcription machinery [BR:
sdiz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
WCY31_06215 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
HTH_36
Motif
Other DBs
NCBI-ProteinID:
XAU16301
UniProt:
A0ABZ3HCP7
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All DBs
Position
complement(1214960..1216813)
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AA seq
617 aa
AA seq
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MTAKELNKALETLFVEHQSENCITYETIAELFEKNPTSAQAKSVLKLAEKNKRCLYTASE
HAKLMNEQEAEARRDAQRKLIENASGEDFDILKQHELMEWSRSDSPVRMYLREMGQIPLL
TKEEEIEISKKIEFGESIIIDAICSVPYLIDFILDYKEPLINRERRVKELFKSFEDEKDD
GDDDNDSDDDEAGEKKVSAKDKKRVDLVVSSFKALEKAKKEWQKASEKLPEGVENGDMNE
EIVHFFLTASFKKKILKEKLLDLGPTSKLINELVKSMETSLKSDEGFEKELKRLEYKLPL
FNDLLRKNHREILDNITELSKEDIAARVPEATMVGTYMEIKKLIQTKEASKGGFNMEPEK
LSDILEQIKRGKAISETAKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVD
KFEYQKGYKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINRINKIMRKYLQENGKE
PDVETIAEEVGLSVEKVKNVIKITKEPISLEAPIGSEEDGRFGDFIEDRTSLSPSDAILK
DDLKVQIEGVLEQLNEREKAVIKMRFGIMDDESDRTLEEIGKELNVTRERVRQIESSAIK
KLKHPKVGRKLKNYIEE
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaaaagaactcaataaagcccttgaaaccctttttgtcgaacaccaatccgag
aattgtatcacctacgaaacaatcgcggagctttttgagaagaacccgacatccgcccag
gcaaaaagcgtcctgaaacttgccgaaaagaacaaacgctgcctctacaccgcttcggag
cacgccaagctcatgaacgagcaggaagccgaagcgcggcgcgatgcccagcgcaaactg
atcgaaaacgccagcggcgaggatttcgacatcctcaagcagcacgagctgatggagtgg
tcccgctccgactccccggtacggatgtacctgcgcgaaatgggacagatcccgctcctg
accaaagaggaggagatcgagatctcgaagaagatcgaattcggtgagagcatcatcatc
gacgcgatctgttccgtcccctacctgatcgacttcatccttgactataaagagccgctc
atcaatcgcgaacgccgtgtcaaagagctcttcaaaagctttgaagacgaaaaagacgac
ggcgacgacgacaatgacagcgatgacgatgaggccggcgaaaagaaagtcagcgcgaaa
gataaaaagcgcgtcgatctcgtcgttagcagcttcaaggccctcgaaaaggcgaaaaaa
gagtggcagaaagcctccgaaaaactgcctgaaggggtcgagaacggcgacatgaatgaa
gagatcgtccacttcttcctgacggcaagcttcaaaaagaagattctcaaagagaagctg
cttgacctcggaccgacttccaagctgatcaacgagctcgtcaaatcgatggagacctcc
ctcaagagcgacgaagggtttgaaaaagagctcaagcgtctcgagtacaagcttccgctc
ttcaacgatctgctccgcaagaaccacagagagatcctcgacaacattaccgagctctcc
aaagaggatatcgcggcgcgggtccccgaagcgaccatggtcggcacctatatggagatc
aagaagctgatccagaccaaagaggcctccaagggcggcttcaatatggaaccggaaaag
ctctcggacatcctcgagcagatcaagcgcggtaaggcgatctccgagacggccaagaca
cggatggcgaaatcgaacctccgcctcgtcgtctccatcgccaagcgctacacgaaccgt
ggactccccttcctcgacctgatccaggaggggaacatcggcctgatgaaagcggtcgac
aagttcgaataccagaaggggtacaagttctccacctacgccacctggtggatccggcag
gcgatcagccgcgccatcgcagaccaggcgcgtacgatccgtatcccgatccacatgatc
gagacgatcaaccgtatcaacaagatcatgcgcaaatacctgcaggaaaacgggaaagag
ccggatgtcgagacgatcgccgaagaggtcggcctctccgtcgagaaggtcaagaacgtc
atcaagatcaccaaagagccgatctccctcgaggcaccgatcggcagcgaagaggacggc
cgtttcggcgacttcatcgaagaccgcacctcgctctcgccttccgacgcgatcctcaaa
gatgacctcaaggtccagatcgaaggtgtgctcgagcaactcaacgagcgcgaaaaagcc
gttatcaagatgcgtttcgggatcatggacgacgaaagcgaccgcaccctcgaggagatc
ggtaaagagctcaacgtcacccgcgaacgcgtccgccagatcgaaagcagcgcgatcaaa
aagctcaagcaccctaaagtcggccgcaaactcaagaactatatcgaggaataa
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