Sulfurimonas diazotrophicus: WCY31_12520
Help
Entry
WCY31_12520 CDS
T11008
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sdiz Sulfurimonas diazotrophicus
Pathway
sdiz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdiz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WCY31_12520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdiz03019
]
WCY31_12520
Messenger RNA biogenesis [BR:
sdiz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
WCY31_12520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
Lactamase_B_6
MupG_C
DUF6624
Motif
Other DBs
NCBI-ProteinID:
XAU15047
UniProt:
A0ABZ3H942
LinkDB
All DBs
Position
complement(2445677..2447743)
Genome browser
AA seq
688 aa
AA seq
DB search
MSEETQAPVAEAKKNTENKPAQNREGEPRRRRSSNRNRSRSRQKPKEGEAKKEGEGQSQN
RSRGGRGGNRGENRGENRGENRGESRAKSGGGRSGGNRNRRRNAPAPTEQSLLENARQNE
ASQRVRVSPYTKIDAEVKAKVRITPLGGLGEIGGNMMVMETDNEAILIDVGMSFPDEEMH
GVDILVPDFTYVREIKDKIVGVIITHAHEDHIGAVPYLYKEMQFPLYGTALPLAMIGNKF
DEHHLKEFRRYFRPIEKRVVYQIGNDFQVEWMHMTHSIIDSSSIAVTTEAGTVIHTGDYK
IDHTPVDGFPADLHRLAHYGSQGVLALLSDSTNSYNKEITPSELTVAPALDRVFSKTKGR
IILSTFSSNIHRVFQAIQAGIKYGRKVCVIGRSMERNLEVAMQYEYIKLPKNIFVDADDV
SRMNDKDVLIITTGSQGEPNSALFRTAIGEHRHIKIKPGDLIILSSRAIPGNEGSISQML
NHLERAGAKVARDRDLHVSGHGGAEEQKLMLRLVQPKFFLPIHGEYNHVMRHRETGIACG
VPERNIHLMSDGECVEVTPKYMRKVKTVKSGKTYIDNQSNNLIEDDIVIDRQKMATEGMV
MIVAQVSKADSHLISKPKVSSFGLVPDKQDKAFAQEMEDVLEHFLTNLKPGIIENPKAME
NDLRQVVRKHIYRKMKKYPLITPTIFVM
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaagaaacacaagcccctgtcgcagaagcgaagaaaaatacagaaaacaaaccg
gcccagaaccgtgaaggcgaaccgcgccgccgccgttcatccaaccgcaaccgcagccgc
agccgtcagaaacccaaagagggtgaagcgaaaaaagagggcgaaggccagagccagaac
cgcagccgcggcggccgtggcggcaaccggggtgaaaaccgcggggaaaaccgcggggaa
aaccgtggcgaaagtcgcgcgaaaagtggcggcggacgttccggcggcaaccgcaaccgc
cgccgcaacgccccggcaccgacggagcagagcctgctggagaatgcgcgccagaacgag
gcgtcgcagcgcgtccgtgtcagtccgtatacgaagattgatgcggaggtgaaggcgaag
gtccgtatcaccccgctgggcggtctcggcgagatcggcggaaacatgatggtcatggag
acggataacgaagcgatcctgatcgatgtcgggatgagtttcccggacgaagagatgcac
ggcgtcgatattcttgtcccggatttcacctatgtacgcgagatcaaagacaagatcgtc
ggcgtcatcattacccacgcccacgaagaccatatcggtgcggtcccatacctctacaaa
gagatgcagttcccgctgtacggtacggcgcttccgctggcgatgatcggcaacaagttc
gacgaacaccatctcaaagagttccgccgctacttccgcccgatcgagaagcgcgtcgta
taccagatcgggaacgatttccaggtcgagtggatgcacatgacccactccatcatcgac
tcctcttctatcgcggtgacgacagaggcgggaacggtcatccatacgggtgactacaaa
atcgaccatacgcctgttgacggattcccggcagacctgcaccgcctggcgcactatggc
agtcagggcgtcctggcactcctgtcggattcgacgaactcgtacaacaaagagatcacg
ccgagcgaactgacggtcgccccggcgctggaccgcgtcttctcgaaaacgaaagggcgc
attatcctctcgacgttcagctcgaacatccaccgcgtcttccaggcgatccaggcgggt
atcaagtacgggcgtaaggtctgcgtcatcggccgttccatggagcgcaacctcgaagtg
gcgatgcagtacgagtacatcaagctgcccaaaaacatcttcgtcgatgcggatgacgtc
agccggatgaacgacaaggacgtcctcatcatcaccacgggttcgcagggagagccgaac
tcggcactgttcagaacggccatcggcgagcaccgccacatcaagatcaagccgggcgac
ctgatcatcctctcctcccgggcgatcccgggcaacgagggctccatttcgcagatgctc
aaccaccttgagcgcgccggggccaaagtggctcgcgatcgcgatctgcacgtctccggt
cacggcggggcggaagagcagaagctgatgctgcgtctggtgcagccgaaattcttcctg
ccgatccacggcgaatacaaccacgttatgcgccacagagagacgggaatcgcctgcggg
gttccggagcgcaacatccatctgatgagcgacggcgagtgtgtcgaagtgacgccgaag
tatatgcgcaaggtcaaaaccgtcaaatcaggcaagacctacatcgacaaccagagcaac
aacctgatcgaagacgacatcgtcatcgaccgccagaagatggcaacggaggggatggtc
atgatcgttgcccaggtcagcaaagcggattcgcacctgatctccaagccgaaggtcagc
agtttcggtttggtgccggacaagcaggacaaagcgtttgcccaggagatggaagatgtc
ctggaacacttcctgactaatctcaagccggggatcatcgaaaaccccaaagcgatggag
aacgatctgcgccaggtcgtccgcaagcatatctatcgcaaaatgaaaaagtaccccctt
atcaccccgaccatctttgtgatgtga
DBGET
integrated database retrieval system
