Sphingobacterium daejeonense: NCTC13534_00172
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Entry
NCTC13534_00172 CDS
T06632
Name
(GenBank) DNA repair protein RadA
KO
K04485
DNA repair protein RadA/Sms
Organism
sdj
Sphingobacterium daejeonense
Brite
KEGG Orthology (KO) [BR:
sdj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdj03400
]
NCTC13534_00172
DNA repair and recombination proteins [BR:
sdj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NCTC13534_00172
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_25
ATPase
Zn_ribbon_LapB
ChlI
DnaB_C
AAA
Lon_C
AAA_22
AAA_24
AAA_16
AAA_14
AAA_5
CobU
nSTAND3
ABC_tran
SLFN-g3_helicase
AAA_18
NTPase_1
NACHT
Hrs_helical
Viral_helicase1
Elong_Iki1
DEAD
DUF7129
RNA_helicase
Isochorismatase
NPHP3_N
DZR
zf-C2H2_7th_ZNF462
zf-RING_10
Motif
Other DBs
NCBI-ProteinID:
VTP86891
LinkDB
All DBs
Position
1:161126..162514
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AA seq
462 aa
AA seq
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MAKSKSAYFCQSCGYESPKWLGQCPSCKQWNTFVEEVVEKASSRVPEWRSTTSTPGVQKR
ANKAAVIHEIVYSEEQRIHAPDKEFNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQLALSI
PKVKTLYISGEESEQQIKMRAERLSQNSNANCYILTETSMQNIFKQIDQVEPNVVVIDSI
QTLHSAQIESAPGSVSQVRECTAELLRFAKETNTPVFIVGHITKDGSIAGPKVLEHMVDT
VLQFEGDRNHVYRILRAVKNRFGSSSELGIYEMQGSGLREVSNPSEIMLSQREEQVSGIA
VAAMLEGMRPLMIEVQALVSNSAYGTPQRSSTGFDTKRLNMLLAVLEKRFGFRLSAQDVF
LNIAGGLRVEDPAIDLAVIAAIISSQQDIALESNITFAGEVGLSGEIRAVNRIEQRIQEA
EKLGFEQIFISKYNTKGLDIKRYQILVRPVATLEDIFRILFG
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaatcaaaatcagcatatttctgtcaatcctgtggatatgaatctcctaaatgg
ctaggtcaatgtccttcatgtaaacagtggaatactttcgtagaggaagttgtggaaaag
gcatccagcagagtgcctgaatggagaagcacaacctcaaccccaggtgtacagaaaaga
gcaaacaaagctgcagtaatacatgaaatcgtatattctgaagaacaaagaatccatgct
ccagacaaagaattcaatcgcgtactgggaggaggaattgtacctggatcgttggtcctg
atcggaggggaacccggaatcggtaaatcaactctaatgttacaacttgcattatcaatt
ccgaaagtcaaaacactttatatctcaggcgaggaaagcgaacagcaaataaaaatgagg
gccgaacggttgtcacaaaactcaaatgctaattgctatatattgacggaaacgtcaatg
cagaatatctttaaacagattgaccaagtggaacccaatgtcgttgtcattgattctatc
caaacgctgcactcggcacagattgaatcagcacccggctcggtttcccaggtcagagaa
tgtaccgctgaattgttgcgcttcgcaaaagaaacaaatacaccggtatttatagtcggc
catatcaccaaggacggatctatcgccggaccaaaagtattggaacatatggtggatacg
gttttgcagtttgaaggagatcggaaccatgtataccgtattttacgagcagtaaaaaac
agatttggatcatcctcggaattaggaatttatgaaatgcagggttctggattaagagaa
gtttccaatccttcagaaattatgctttcccaaagagaagagcaggtcagtggaattgct
gtagcggccatgttagagggtatgaggcccttaatgattgaagtgcaggcactggtctca
aattcagcgtatggaacgccacagcgaagctctacaggttttgatacaaagagattgaac
atgttgctggcagtcctggaaaaaagattcggattcagattgagtgcacaggatgtattc
ttgaatattgcaggtggattgagagtcgaagacccagcaattgacctcgccgttattgct
gcaatcatctcttcgcaacaagatatagctttggaatctaatattacatttgccggtgaa
gtaggcctctccggggaaataagagctgtaaatagaattgaacaaagaattcaagaagca
gaaaaattagggttcgaacagatttttatttcgaaatacaacaccaaaggattagatatt
aaaagatatcagatattggtcagaccagtggcaacattagaggatatattcagaatatta
tttggctaa
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