Sphingobacterium daejeonense: NCTC13534_00705
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Entry
NCTC13534_00705 CDS
T06632
Symbol
uvrA_3
Name
(GenBank) Excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
sdj
Sphingobacterium daejeonense
Pathway
sdj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sdj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC13534_00705 (uvrA_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdj03400
]
NCTC13534_00705 (uvrA_3)
DNA repair and recombination proteins [BR:
sdj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC13534_00705 (uvrA_3)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NCTC13534_00705 (uvrA_3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_16
nSTAND1
AAA_29
DnaJ_CXXCXGXG
AAA_25
nSTAND3
RsgA_GTPase
Viral_helicase1
AAA_23
Motif
Other DBs
NCBI-ProteinID:
VTP89926
LinkDB
All DBs
Position
1:complement(602189..605038)
Genome browser
AA seq
949 aa
AA seq
DB search
MAVRKAVDLGDQSELEVFGARVHNLKNIDVSFPRNQLVVITGLSGSGKSSLAFDTIYAEG
QRRYMETFSAYSRQFLGGMERPDVDKISGLSPVISIEQKTTSKNPRSTVGTITEIYDFLR
LLYARIGEAYSYVTGKRMERMSDDEITDRILKEFNGEGIYILAPVVKGRKGHYRELFEQI
RKQGYTKVRVDGEILDIVPKMQVNRYKIHDIEIVVDRVIVEKEGRKRLFTSIVQALKTAK
GIIKISSKDNKEQFFSRYLMDAESGISYDEPQPNTFSFNSPYGACPRCDGLGYIYEIDKK
IVIPDRTLSIQKGAIVPLGPVKDSWNFAVLKAVAKKYEISLTTSIDKISEDLIDNLLFGE
EEPISLTVSYGSYGAREYKVQFSGIFKMLEENNAKYSDESQGLEEFRTQVVCPECHGARL
KKESLHIKVDNKNISELAELDIVALNEWFEGIETRLTERQNIIATEIIKEIKTRIGFLLD
VGLNYLTLNRSSKSLSGGEAQRIRLATQIGSQLVNVLYILDEPSIGLHQRDNERLINALK
NLRDIGNSILVVEHDKDMILSSDYVIDMGPAAGVHGGRVVAQGTPKQLMKENTLTTDYLN
GTKEIQIPAERRKGNGHTLSLKGAQGHNLKNVSIDIPLGELVLVTGVSGSGKSSLITNTL
YPILNHHFFRAKAKPLPYSKIEGLENIDKVIEIDQSPIGRTPRSNPSTYTGVFSDIRALY
VQLPESKIRGYKPGRFSFNVKGGRCETCQGAGMKIIEMNFLPDVQVPCETCNGKRYNRET
LEVRYRGKSISDVLDMSIDEAVTFFENIPSIYRKIKTLQDVGLGYITLGQSSTTLSGGEA
QRVKLATELSKKDTGKTFYILDEPTTGLHFEDVNVLLGVINRLVDRGNTVLIIEHNLDVI
KAADWVIDMGPEGGKNGGKLLFQGTPEDLIKQKNSETGRFLKIEMNYNK
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atggccgtaagaaaagcagtagaccttggagatcaaagcgagttagaagtatttggcgca
cgggtgcacaaccttaagaatatagatgtatcatttcctagaaaccaacttgtcgttatc
actggtttaagtggtagcggaaagtcatcattggcattcgacaccatttatgctgaagga
caaagaagatatatggaaacattctctgcctatagccgtcagtttttgggtggcatggag
cgaccggatgttgataagatttcgggattgagtccagttatctcaattgaacagaaaacg
acttccaaaaacccaagatcaacagttggcaccataacagaaatatatgacttcttacgt
ctactttacgctagaattggagaggcatattcctatgtcactggaaaaagaatggaacgt
atgtcagacgatgagattactgaccgaattcttaaagaattcaatggtgaagggatttat
atccttgccccagttgtgaaaggtcgtaaaggacattatcgtgagctttttgagcaaatc
aggaaacaaggttacaccaaagtaagagtagatggagaaatcttggatatcgttccaaaa
atgcaagttaacagatataagattcatgatattgaaattgtcgttgatcgagttatcgtt
gaaaaagaaggtcgtaaaagattgtttacatccattgttcaagcattaaagactgccaaa
ggaattatcaagatttcaagtaaagataataaggaacagttcttcagtagatatcttatg
gatgcggaatctggcatttcatatgatgaaccgcaacccaatacattttcgttcaattct
ccctatggtgcttgcccgagatgtgatggattagggtatatttatgaaatagataaaaaa
atagtcatccctgaccgtacattgagtattcagaagggtgctattgttcctttaggacct
gtcaaagattcttggaattttgcggtattgaaagcagtggctaaaaagtatgaaatatca
cttacgacgtccattgataaaatttctgaggatttaattgacaaccttctatttggtgaa
gaagagccaatttcacttacagtttcttatggttcttatggtgcccgagaatataaggtt
caattttcaggaatcttcaagatgcttgaggaaaacaatgccaagtacagcgatgaatcc
caaggattggaagaattccgcactcaggtagtatgtccagaatgccatggtgcaagattg
aaaaaggaatccttgcatatcaaggttgataacaaaaatatctctgaacttgcagagttg
gacattgtagctttgaatgaatggtttgaaggcattgaaacacgacttactgaaagacag
aacatcatagcgacagaaatcataaaggaaataaaaacccggattggcttcttacttgat
gttggtttaaattatttgacgctgaaccgtagttcaaaaagtctttcgggcggtgaagct
caaaggatccgattggctactcagattggctcacaattagtgaatgttctatatatttta
gatgagccgagcattggacttcatcaacgcgacaatgaaagattgatcaatgcattgaag
aaccttagagacattggtaattcgattcttgttgtcgagcatgacaaggacatgatctta
agttcggattatgttattgatatgggtcctgcagctggggttcatggtggaagagtggtt
gcacagggcacaccgaaacaactgatgaaggaaaacacgttgaccacagattatctgaac
ggaaccaaagaaattcaaataccagcagaaagaagaaaaggaaatggccatacactatca
ttaaaaggtgcccagggtcacaacttaaagaacgtaagcattgatataccattgggcgaa
ctagttcttgtaacgggtgtttcgggctcaggtaagtctagcttaattaccaatacgctc
taccccattttaaaccaccatttctttagggctaaggcaaagccactgccttatagtaaa
attgaaggtttggagaacatcgacaaagtaattgaaatcgatcaatctccgatcggaaga
acgccacgatcgaatccgtcgacttacactggtgttttttctgacatccgagctttatat
gttcaattgccggagtcaaagattcgcggatataaacctggtcggttctctttcaatgta
aaaggtggtagatgtgaaacctgtcaaggcgcagggatgaagattatcgaaatgaatttt
cttcctgacgttcaggttccttgtgaaacctgcaatggaaaacgctataaccgagagact
ttagaggttcgataccgtggaaagtccatttcggatgtattggatatgagtattgatgag
gctgtgactttctttgaaaatataccgtcaatttatagaaaaatcaagacccttcaagat
gtcgggttgggttatattacgttaggtcaatcctcaacaactttatcaggaggagaggct
cagcgtgtcaagttggcaacggaactttccaagaaagacactggaaaaactttctatatc
ttggatgaacccactacaggattgcactttgaggatgttaacgttcttttaggagttatc
aacagattagtagaccgtgggaacacggtattgataatcgagcacaatctcgatgtcatc
aaagctgcagactgggtaatcgacatgggtccggagggcggaaaaaacggaggaaaatta
cttttccaaggaactcctgaagaccttatcaaacagaagaattctgaaactggaaggttc
ttaaaaattgaaatgaattataataaataa
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