Sphingobacterium daejeonense: NCTC13534_01623
Help
Entry
NCTC13534_01623 CDS
T06632
Symbol
deaD_1
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sdj
Sphingobacterium daejeonense
Pathway
sdj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC13534_01623 (deaD_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdj03019
]
NCTC13534_01623 (deaD_1)
03009 Ribosome biogenesis [BR:
sdj03009
]
NCTC13534_01623 (deaD_1)
Enzymes [BR:
sdj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC13534_01623 (deaD_1)
Messenger RNA biogenesis [BR:
sdj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC13534_01623 (deaD_1)
Ribosome biogenesis [BR:
sdj03009
]
Prokaryotic type
rRNA helicases
NCTC13534_01623 (deaD_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
YwpF
Motif
Other DBs
NCBI-ProteinID:
VTP93693
LinkDB
All DBs
Position
1:complement(1407578..1409389)
Genome browser
AA seq
603 aa
AA seq
DB search
MNPFLELGIRHDIVNAITELGFEKPSPIQEKAIPVLLTGNDDFVGLAQTGTGKTAAFGLP
LLEQLDFSVKQPQALVLCPTRELCLQIARDLEKFAKYIDNVHVVAVYGGANIGDQLRQIR
RGVQIVVATPGRMLDIIGRNAIDFSNVRYVVLDEADEMLNMGFQEDINNILSETPDDKKT
WLFSATMPKEVRRIAQNYMTNPQELTVGTKNTGNENIEHQYFMVKAKDKYAAFKRIVDFY
PEIFGIVFCRTKIETQEIAEALIKDGYNADSLHGDLSQQQRDKVMKRYRERNLQLLIATD
VAARGIDVNDVTHVINYSLPDETENYTHRSGRTARAGKTGISISLINGKEMSKIRHIEKI
IGKQFIPKQVPQGAEVCEKQLLALVDKVHNVEVHEDQINAFLPQILESLQDLSKEEVIKK
FASLEFNRFLNYYQDAPDLNFDARDSRGERGDRSERRTGSKGYTRLFINLGSVDEFSRGD
MLSYICNKGKISGKSVGKIDLKGVFTFFEVLDADVDSVFQGFKDVDFNGRNVRIEVSGDK
PSSDRGGRRRSGGGGGDRRDRGGDRGSRGGSGRRDRGDRGDRGGSGFRDFSGKRRDRESK
SRY
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgaacccatttttagaactgggaatccgtcatgatattgttaatgccatcactgagtta
ggtttcgagaaaccttctcccatccaggaaaaagccattcctgtattactgactggtaac
gacgattttgtcggattagcccaaacaggtacagggaagacagcggcatttggtcttcca
ctattagaacaactagacttttcagtaaaacaacctcaagcattggtcctatgtcctacg
cgtgagctatgtttgcaaatcgcaagagacctagaaaaatttgccaagtacatcgataac
gtacatgtggttgccgtttatggcggtgccaatatcggtgatcaattacgccagattcgt
cgtggcgttcaaatcgtagtagctacaccaggtagaatgttggatatcattggccgcaat
gccattgacttctctaatgttcgttatgttgtgctagacgaggctgacgaaatgttaaac
atgggattccaagaagatatcaacaatatcctttcggaaactccagatgacaaaaaaaca
tggttgttttcagcaactatgcctaaagaagtgcgccgtatagcacagaactacatgact
aacccgcaagagttaacagtaggaacaaaaaatacgggtaacgagaatatcgaacaccaa
tattttatggttaaggcgaaagacaaatatgcagcattcaagcgtattgttgatttctac
cctgagatttttggtatcgtattctgtcgtacaaaaattgaaactcaagaaattgctgag
gccttgattaaggatggctacaatgcagactctcttcacggagatttgtctcaacagcaa
cgcgataaggtgatgaaacgttaccgtgagcgcaacttgcagcttttaatcgctactgac
gttgcagctcgtggtattgatgttaatgacgtaactcacgtaattaactattcactacct
gatgaaacggaaaactacacgcacagatctggtcgtactgcccgtgcaggaaagactggt
atttcaatctcattgatcaatgggaaagaaatgagcaaaatccgtcacatcgaaaaaatc
attggtaagcaattcattcccaaacaagttcctcaaggtgctgaagtttgtgaaaaacaa
ttgttagccttagttgataaggtacacaatgttgaagttcatgaagatcaaatcaatgct
ttcttacctcagatcttagaaagtcttcaagacctaagcaaagaggaagtaatcaaaaaa
ttcgcttcattagaattcaatagattcttgaattattaccaagacgctccagatcttaat
tttgacgcacgtgactctagaggtgaacgtggtgacagatctgaacgtcgtacaggttca
aaaggatatactcgtttgtttatcaaccttggatccgtagatgaattcagccgtggagat
atgctttcttacatctgtaacaaaggtaagatctcaggtaaatcagttggaaagattgac
ttaaaaggtgttttcactttctttgaagtgttagatgctgatgttgacagtgttttccaa
gggtttaaagacgttgatttcaacggaagaaatgttagaatcgaagtttcaggtgataaa
ccttcatcagacagaggcggaagacgtcgttctggaggtggtggtggtgaccgcagagac
agaggtggagacagaggttctcgtggtggttcaggccgcagagacagaggtgatagaggc
gacagaggaggatcaggtttccgcgatttctcaggaaaacgtagagacagagaatctaaa
agcagatattaa
DBGET
integrated database retrieval system
