Sphingobacterium daejeonense: NCTC13534_02108
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Entry
NCTC13534_02108 CDS
T06632
Symbol
rtcB_1
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sdj
Sphingobacterium daejeonense
Brite
KEGG Orthology (KO) [BR:
sdj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sdj03016
]
NCTC13534_02108 (rtcB_1)
Enzymes [BR:
sdj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NCTC13534_02108 (rtcB_1)
Transfer RNA biogenesis [BR:
sdj03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NCTC13534_02108 (rtcB_1)
Prokaryotic type
tRNA splicing ligases
NCTC13534_02108 (rtcB_1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
VTP95417
LinkDB
All DBs
Position
1:1805606..1806721
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AA seq
371 aa
AA seq
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MNTAMKLPITVAGALMPDAHQGYGLPIGGVLAANNAVIPYGVGVDIGCRMALSIFDLPAT
YLESHHDDLKKILMKTTRFGAGNGFLKHERLDHEVLENELFNENPFIQNLKDKAWTQLGS
SGGGNHFVEFGIMEFQAEDKELGIHEGTYLALLTHSGSRGLGAMIANHYTKLAMELCKLP
YEAKHLAYFDLESAEGQEYWMAMNLAGDYASACHEVIHEKVLSELGAERLAKIENHHNFA
WKEKWKGEDVIVHRKGATPAGEGVMGIIPGSMAAPGFLVRGKGEEQSINSASHGAGRLMS
RTQAIKTLSRSEVSKKLEDLGITLIGADLDEAPMAYKNIHEVMAAQTDLVNVVASFHPKV
VRMADDGSKED
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
atgaacactgccatgaaattaccgattacagttgctggtgcattgatgccagatgctcat
caaggttatggtttgccaataggaggtgttttggcggcaaacaatgccgttattccttat
ggagtcggagtggatatcggatgccgaatggccttgtccatatttgatttgccagcaaca
tatctagaaagccatcatgatgatcttaagaaaatcttgatgaaaaccacaagatttggt
gcaggaaatggatttctaaaacatgagcgattggatcatgaagtattggagaatgaattg
ttcaatgaaaacccttttattcagaatctgaaggacaaggcttggacccaattagggtca
tctggtggaggaaaccattttgtggaatttggaattatggaatttcaggcagaagataag
gagcttggaattcatgaaggcacctacttggctttactaactcattccggatcaagaggt
ttaggggctatgattgccaaccattatacgaagttggccatggaattatgcaagcttccc
tatgaagccaagcatttggcttactttgacttagaatctgctgaagggcaagaatattgg
atggcgatgaatttagctggtgattatgcttcagcctgtcatgaagtgattcatgaaaaa
gtattgtcagaactaggggcagaaaggttggcgaaaattgaaaaccaccacaattttgca
tggaaagagaaatggaaaggagaggatgtcattgtacaccgcaaaggtgctacaccagct
ggagaaggggtgatgggaattatacctggatccatggcagcgccaggattcttggttcgt
ggaaaaggtgaagaacaatccatcaactctgcttcgcatggcgcaggtcgattaatgagc
agaacccaagccatcaaaactttatctaggtctgaagtttccaaaaaactagaggattta
ggtataactttgattggggcagacttggatgaggctccaatggcctataaaaatatacat
gaagtcatggcagcacagacagatttagtaaatgttgttgcaagctttcacccgaaagtt
gtaagaatggctgatgatggttcaaaagaagactga
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