Sphingobacterium daejeonense: NCTC13534_02131
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Entry
NCTC13534_02131 CDS
T06632
Symbol
rtcB_2
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sdj
Sphingobacterium daejeonense
Brite
KEGG Orthology (KO) [BR:
sdj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sdj03016
]
NCTC13534_02131 (rtcB_2)
Enzymes [BR:
sdj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NCTC13534_02131 (rtcB_2)
Transfer RNA biogenesis [BR:
sdj03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NCTC13534_02131 (rtcB_2)
Prokaryotic type
tRNA splicing ligases
NCTC13534_02131 (rtcB_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
VTP95485
LinkDB
All DBs
Position
1:1827290..1828681
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AA seq
463 aa
AA seq
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MGSKLSGKDLIKLGFPKTNAINIALGQITRYRKREKKEQILLEAKSVLLNPDQFLGHGTW
GKVAEGLIKPVEVRLQQLRTQRVPFSVFGENEIDEVAKRQLYDALKLPVSVQGALMPDAH
SGYGLPIGGVLATDNAVIPFGVGVDIGCRMSLSIFDIPASYIKGKEFQLRNILKDNTAFG
LTETQKTRTDHELFSRLEFQEIPILKSLKDKAYKQLGSSGSGNHFVEFGIVELVDPKPNW
ELGKGSYLAILSHSGSRGLGANIAKHYSYLATKQCPLPKHVQHLAWLDLDTHDGQEYWLS
MNLAGDYAKACHDNIHQRLAKAIGKRPRLTIENHHNFAWKEVVGDKECIVHRKGATPASV
GMLGIIPGSMTAKGFIVEGKGNIESINSASHGAGRQMSRGACKNSISKSEMSKILDSYQV
ELIGGSVDEAPMAYKDIEKVISLQQELVNVLGTFTPKIVRMDK
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaagtaaactttctgggaaagacctcattaaattgggttttccaaaaactaatgcg
attaacattgcattggggcaaattacgcgatataggaaacgcgaaaaaaaagaacaaata
ttattagaggcaaaatctgtgttattaaatcccgatcaatttctaggacatggaacatgg
gggaaggtcgctgaaggattgataaaacctgttgaagtgcgcttgcaacaattaagaact
caaagagtgccattttctgtatttggagagaatgagatcgatgaagttgcaaagagacag
ttatacgatgccttaaagcttccagtttcagttcagggtgctcttatgccagatgcacat
tctggatatggattgccaataggtggggtactagcaacagacaatgctgtaattccattt
ggtgtaggggtagatattggttgcaggatgagtctttctatctttgatattccagcatct
tacattaaaggtaaagaatttcaattaagaaatatcttgaaagataatactgcctttggg
ttaacagaaactcaaaagactaggactgatcatgagttattttcaagactggaatttcag
gaaattccaatactaaaatcactgaaggacaaagcttacaaacagttaggctcctcagga
agtggaaatcattttgtggagtttggaattgtagaactcgttgatcctaaaccaaactgg
gagttaggaaagggttcttatctcgctattctgtcacattctggatcacgtgggcttggt
gctaatattgccaaacattatagttatttggctactaagcaatgtcctttgccaaaacat
gttcaacacttagcttggttagatcttgacacgcatgatggtcaagaatattggctttct
atgaatcttgctggcgattatgccaaagcctgccatgacaacatccaccaacggttggct
aaggccattggtaaacgtccaaggcttactattgaaaatcaccataattttgcttggaaa
gaagtagtaggtgataaagaatgtattgtccataggaaaggagcaaccccagcttcagta
ggaatgttgggtattattccaggctctatgacagccaaaggatttattgttgaaggtaaa
gggaacatagaaagtattaattcagcttcgcatggagcaggaagacagatgtctagaggt
gcttgtaagaattccatcagcaaaagtgaaatgtccaagattttagatagctatcaggta
gaattgattggtggttccgttgatgaagctccaatggcttacaaggatattgaaaaagta
atcagcctgcaacaggaattggtaaacgtcttaggcacatttacacctaagatagttaga
atggacaaataa
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