Sphingobacterium daejeonense: NCTC13534_02374
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Entry
NCTC13534_02374 CDS
T06632
Name
(GenBank) Eukaryotic DNA topoisomerase I, catalytic core
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sdj
Sphingobacterium daejeonense
Brite
KEGG Orthology (KO) [BR:
sdj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sdj03032
]
NCTC13534_02374
03400 DNA repair and recombination proteins [BR:
sdj03400
]
NCTC13534_02374
Enzymes [BR:
sdj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
NCTC13534_02374
DNA replication proteins [BR:
sdj03032
]
Prokaryotic type
DNA Topoisomerases
NCTC13534_02374
DNA repair and recombination proteins [BR:
sdj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
NCTC13534_02374
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Arm-DNA-bind_2
Rrn7_cyclin_C
Motif
Other DBs
NCBI-ProteinID:
VTP96215
LinkDB
All DBs
Position
1:complement(2014706..2015545)
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AA seq
279 aa
AA seq
DB search
MFGFAPTHLDHIQVTGVDIKGRKQYIYHENWTNVRNVDKFSTLLPFGRNLPKLRNKINRE
IKRDKFDLQKVSALALKIIDLTSMRPGNSFYQKQNGSYGLTTLEKKHLILDQSSISFKYK
GKKGVEQVKELKKKNLSKYLEELKSIPGKRLFKYYDAENKIHKLDASQLNAFLQKYFKND
ISCKTFRTWNACYLSLEFLIKQGAVESEKEREKISKKLVEKVAHDLGNTVAVARKNYILP
KIISEYINGNLNAWIHKTAKNPVSKNRIHKKLLKIITEG
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atgtttggatttgcccctacccatctggaccacatccaggttacaggtgtagacattaag
ggaagaaagcaatacatctatcatgagaactggactaacgtcagaaatgttgataaattt
tccactttgctacctttcggaagaaatctacccaaacttagaaataagattaatagggaa
atcaaaagagataaatttgatcttcaaaaagtctccgctttggcgcttaagattattgat
ctaacctccatgcgaccgggaaatagtttttatcaaaaacaaaatggttcttatggactt
accactctagaaaaaaaacacctcatccttgatcaaagttcaatttctttcaaatataaa
ggcaaaaaaggagttgaacaggtaaaagaactcaagaagaaaaatctctccaaataccta
gaagaattgaaatcaattcctggaaaaagactcttcaaatattatgacgctgaaaataaa
atacataaactggatgcctctcaactcaatgcgtttttacaaaaatattttaaaaatgat
atttcctgcaaaactttcagaacttggaatgcttgttatttaagtttggaattcttaata
aaacagggtgcagttgaatccgagaaagaaagggagaagatatccaaaaaattagtcgaa
aaggttgcacatgacttaggaaataccgttgctgtagctagaaaaaattatattttaccc
aaaataatatctgaatatattaacggaaacttaaatgcctggatccataagacagcaaaa
aatcctgtctccaagaataggattcataaaaaattattaaaaattattactgagggataa
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