Sphingobacterium daejeonense: NCTC13534_03248
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Entry
NCTC13534_03248 CDS
T06632
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor rpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
sdj
Sphingobacterium daejeonense
Pathway
sdj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sdj00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NCTC13534_03248 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdj03021
]
NCTC13534_03248 (rpoD)
Transcription machinery [BR:
sdj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NCTC13534_03248 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r1_2
Sigma70_r4_2
UPF0122
PgaD
Motif
Other DBs
NCBI-ProteinID:
VTP99378
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All DBs
Position
1:2688449..2689309
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AA seq
286 aa
AA seq
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MRQLKITQSITNRESQSLDKYLHEIGKVDLISAEEEVILAQRIREGDQVALEKLTKTNLR
FVVSVAKQYQNQGLTLGDLINEGNLGLIKAAKRFDETKGFKFISYAVWWIRQSILQAIAE
QSRIVRLPLNQVGSLSKISKAFSKLEQEYEREPSPEELADILETTVDKVSDTLSNSGRHV
SMDAPFVQGEENTLLDVLENSDPDTDSSLIDESLSEEIKRSLATLTEREREIIVLFFGLG
SNHQLSLEEIGEKFSLTRERVRQIKDKALQRLRHTSRSKILKSYLG
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgagacagctcaaaattacacaatccatcaccaaccgtgagtcgcagtcccttgacaag
tacttgcatgaaatcggtaaggtagatttaatttcagcagaagaagaggttattctagcc
caaagaattcgtgaaggtgatcaggttgcattagagaaattaactaaaaccaacttacgt
ttcgttgtatccgttgcaaaacaataccagaatcaaggattgaccctaggggacttgatt
aacgaaggaaacttaggcttaataaaagcagcaaaacgtttcgatgaaactaaagggttt
aagtttatatcttatgcggtatggtggattcgtcaatcaattttgcaagcaattgctgag
caatctcgtatcgttcgtttaccattaaaccaagtaggatctctaagtaagatcagcaaa
gccttttctaaattggagcaggaatatgaacgtgagccatcaccagaggaattagctgat
atcttggaaacaactgttgacaaagtatcggatacattaagtaattctggacgccatgtt
tctatggatgcaccatttgtacaaggtgaagaaaatacattattggatgtattggaaaac
agcgacccagacaccgacagttcgttgatcgacgaatcattgtctgaagaaatcaaaaga
tcgttggctactttaacagagcgcgaaagagaaattatcgtattgttcttcggattaggt
tctaatcaccaattgtctctggaagagattggagagaaattcagcttgactagagagcgt
gtgcgtcaaatcaaagacaaagcgctacaacgcttgagacatacctctagaagcaaaatc
ctcaagtcatacttgggataa
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