Sphingobacterium daejeonense: NCTC13534_03938
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Entry
NCTC13534_03938 CDS
T06632
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
sdj
Sphingobacterium daejeonense
Pathway
sdj02020
Two-component system
sdj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sdj00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NCTC13534_03938
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NCTC13534_03938
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sdj03021
]
NCTC13534_03938
Transcription machinery [BR:
sdj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NCTC13534_03938
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
LacI
DUF4158
MarR
Motif
Other DBs
NCBI-ProteinID:
VTQ02101
LinkDB
All DBs
Position
1:3265931..3267394
Genome browser
AA seq
487 aa
AA seq
DB search
MLKQTLQQKLLQKLSPQQIQFIKLLQVPTVSLDARIKEELEENPALEDGSLTNMNDPVEE
YPDKDPDDDFNMEENSYEDEFSVDEYIQEDDYKDYGGGYDHDDEDGKKEIPIAVQDSFYE
NLQNQLDLLALSDKDYIVGQQIIGSLDDDGYLRRPILSLIDDLAFSQNVIVEEEDVEDIL
KIVQSFDPAGIGARNLQECLAIQLRKKDLTNPIIQQAMMVVENYLDEFTKKHYDKIEKQL
GVNSEELKEIVNEILKLNPKPGDSGAAAGKQLQIIPDFHISNNDGILHLTLNGRNAPELR
VSRSYQEMFEHYEKAEKNDKKMREAVQFVKQKLDSAKWFIDAIKQRQQTLLKTMNAIMEY
QYDYFLTGDDRMLKPMILKDIADKIEMDISTVSRVANSKYVQTEFGTFLLKSFFSEAIQT
ESGEEVSNKEVKKILEECIANEDKRKPLADEKLTEILKEKGYSIARRTVAKYREAMNIPV
ARLRKEL
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaacaaactttacagcaaaaactattacaaaaactttcaccgcaacaaattcaa
ttcatcaaattgctacaggtgccaacagtttcattggacgcccgcatcaaagaagaattg
gaagaaaaccctgcgctggaggacggtagtttgactaacatgaacgaccccgtggaagaa
tatcccgataaagatccggatgatgacttcaacatggaagaaaacagctatgaagatgaa
ttcagtgttgatgaatatatccaagaagatgactacaaagactatggcggtggatatgac
catgatgatgaagacggaaaaaaagaaatccctatcgctgtacaagattctttctacgaa
aatctacaaaaccaacttgatctactagcactatctgataaagattatatagttggtcaa
caaataatcggatctcttgatgacgatggttacctaaggagacctatcctatctttgatt
gacgaccttgcgttttcacaaaatgtaattgttgaagaagaagatgtcgaagacatactc
aagattgttcaatcatttgaccctgccggcattggagcaaggaatcttcaggaatgcttg
gcaatccagttaagaaagaaagatctcaccaacccgattatccaacaagcgatgatggtc
gtggaaaattacctcgatgaattcacgaagaaacattacgataaaatcgaaaagcaatta
ggtgtaaactctgaggagctgaaagaaatcgtcaatgaaattcttaagttgaatcctaag
ccaggtgattcaggtgcagctgcaggaaaacaattgcagattatccctgacttccatatc
tccaataatgatggtatcctgcacttgaccttaaatggcagaaacgcccctgaactaaga
gtttcaaggtcttatcaagaaatgtttgagcattacgaaaaagcggaaaaaaacgacaaa
aaaatgcgtgaagcagttcagtttgttaaacagaaacttgattccgcaaaatggtttatc
gatgccatcaaacaaagacaacagactcttttgaaaaccatgaatgctatcatggaatat
caatatgactacttcctaactggcgacgacagaatgcttaaaccaatgattttaaaggat
atagccgacaagatcgaaatggatatttcaactgtatcccgcgttgccaactccaaatac
gtgcaaacagaattcggaactttcttattaaaatcattcttctcagaagctattcaaaca
gaatctggcgaggaagtttctaacaaagaagtgaaaaagattctagaggagtgtattgct
aacgaagacaagagaaaacctttggcagatgagaaattaaccgaaatcctgaaggaaaaa
ggttattcgatcgcgaggcgtactgttgctaaataccgtgaagcaatgaacatcccggta
gcacgtttaagaaaagaattataa
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integrated database retrieval system
