Sphingobacterium daejeonense: NCTC13534_04255
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Entry
NCTC13534_04255 CDS
T06632
Symbol
pcrA
Name
(GenBank) ATP-dependent DNA helicase pcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sdj
Sphingobacterium daejeonense
Pathway
sdj03420
Nucleotide excision repair
sdj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sdj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NCTC13534_04255 (pcrA)
03430 Mismatch repair
NCTC13534_04255 (pcrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sdj03400
]
NCTC13534_04255 (pcrA)
Enzymes [BR:
sdj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC13534_04255 (pcrA)
DNA repair and recombination proteins [BR:
sdj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC13534_04255 (pcrA)
MMR (mismatch excision repair)
Other MMR factors
NCTC13534_04255 (pcrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
PcrA_UvrD_tudor
ResIII
AAA_11
DEAD
YecM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
VTQ03352
LinkDB
All DBs
Position
1:complement(3533348..3535636)
Genome browser
AA seq
762 aa
AA seq
DB search
MDFLAGLNPSQRAAVEQTEGPVMIVAGAGSGKTRVITYRVAHLIQKGVDPFNILVLTFTN
KAAKEMRERIMKVVGSEAKNIWMGTFHSVFARILRVEAELLGYPKNFTIYDTDDTKSLLR
AIIKELNLDDKLYNANHVYGRISSAKNNLISPQEYNKNEAILAEDNANGRGQLGQIYMTY
AQRCYRAGAMDFDDLLFKTNVLLNKYPDVLHKYQHQFKYLMVDEYQDTNFSQYLIVKRLA
AVNENICVVGDDAQSIYAFRGANIQNILNFQKDYPDVKVFKLEQNYRSTKTIVNAANSII
ANNKNQLEKNVFSDNEDGEKIKVSRAFSDNEEGKIVAEAISQEKSLKSLKYKDFAILYRT
NAQSRSLEEALRKINIPYKLYGGTSFYQRKEIKDLIAYFRLTFNPNDEEALKRVINYPRR
GIGDTTVERIMVAADQQQVRLWDVVANAQMFLDGRSAASVSNFGLMIQSFQATAKTNTAF
DTAMHIAQHSGILKDLYEDKSVEGLARYENIQELLNGIKEFSEREDLEEKGLDIFMQDIA
LLTNDDNDKDPNADTVSLMTIHSSKGLEFPVVHIVGLEENLFPSQLSLNSRSELEEERRL
FYVAVTRAEKKLHLSYATSRYRWGTLNNCEPSRFLDELNPSCLDLDFKPRSSAMQDDDFG
SERVQWQRKENSNPSGDVFSKPKPKVVKTTSILPKAHVPSPGFAPSDTSGLQVGMEVEHE
RFGFGKVINLEGNKPDIKATIFFKELGQKQLLLKFAKLRIVN
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
ttggattttttagcaggactgaacccctcacaacgagccgcagttgaacagacagaaggt
ccagtaatgattgttgctggtgcaggatctggaaaaacgcgggtaattacctatagagta
gcccatttaatacaaaaaggagtagatcctttcaatatattggtgttgacctttacaaat
aaggccgcaaaagaaatgcgtgagcgtatcatgaaagtggtcggctcagaagccaagaat
atttggatgggaacattccactctgtctttgcgcgtattttgagagttgaagctgaactt
ttgggataccccaaaaatttcaccatctatgataccgatgataccaaaagcttgctgaga
gcaattattaaagaattaaacctggacgacaagctctataatgctaaccacgtttatggt
aggatatcttcggcaaaaaacaaccttatttctccacaagaatacaataagaacgaggca
atactagctgaggataatgctaatggccgaggacaattaggacaaatctatatgacctat
gcacaacgatgttaccgtgcgggtgcgatggactttgatgatctcctgttcaaaaccaat
gtgctattgaataaataccctgatgtattgcataaatatcagcaccagtttaaataccta
atggtagatgagtaccaggatacaaacttttcacaatacttgatcgtcaagagattggcg
gcagtcaatgaaaatatttgtgtagtaggtgatgatgctcaaagtatctatgcattccga
ggggccaacatccagaatatcttgaacttccaaaaagattatccagatgttaaggtgttc
aaattggaacaaaattatcgttcgaccaaaacaatcgttaatgctgcaaatagtattatc
gcaaataataaaaaccaactcgagaagaatgtattttccgataatgaggatggtgaaaaa
ataaaagtaagccgtgcattttctgataacgaagaaggaaagattgttgcagaagcgatt
tctcaagaaaaatcactcaagagtctaaagtataaggactttgcaatcctttaccgtacc
aatgcccaatcgaggtccttggaggaagcattgagaaaaattaacatcccgtataagctt
tacggtggaacttcgttttatcaacgtaaggaaattaaagatttaattgcttattttagg
ctgacatttaatcctaatgacgaggaagcactgaaaagagtgatcaattatcctcgccgc
ggaataggtgatacaactgttgagcgtattatggttgcagcagaccaacaacaagtgagg
ttgtgggatgtagtagcaaacgcgcaaatgttccttgacggaagaagtgctgcatctgtg
tccaattttggattgatgatccaaagtttccaagcaacagcaaaaactaatactgcattt
gataccgcaatgcacattgcacaacattccggaatcctgaaagatctgtatgaagataag
tcggtcgaaggattggctcgttacgaaaatatccaggaattgttgaacggtatcaaggag
ttctctgaaagagaagacttagaagagaaaggtttggatatctttatgcaggatatcgcc
ctgttgaccaatgatgacaacgataaggatccaaatgctgatacggtctcattgatgacc
attcactcttcaaaaggattggagtttccggtggttcatattgtagggttggaggaaaac
ttgtttccatcgcagctatccttaaattcaaggtcagaactggaggaggaacgtcggttg
ttctacgttgctgtgacacgtgcagaaaaaaaattgcatctatcttatgcaacatcaaga
taccgttggggcactttgaacaactgtgagccaagtcgtttcttggatgaactgaaccca
agttgtttggacctagacttcaaacctcggagctcagcaatgcaggatgatgatttcgga
tcagaaagggttcaatggcaacggaaagaaaatagcaatccttcgggcgatgttttctca
aaaccaaagccgaaagtagtgaagacaacttcgatcttgccaaaagcccatgtaccgagc
cctggattcgctccatcggatacatcaggcctacaagtaggaatggaagtagaacatgaa
cgcttcggatttggtaaagtcattaacttagaaggtaataaacccgacataaaagcaact
atttttttcaaagagttgggacagaagcaattgttgcttaaatttgcgaagcttagaata
gtaaattaa
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integrated database retrieval system
