Sphingobacterium daejeonense: NCTC13534_04354
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Entry
NCTC13534_04354 CDS
T06632
Symbol
recQ_3
Name
(GenBank) ATP-dependent DNA helicase recQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sdj
Sphingobacterium daejeonense
Pathway
sdj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sdj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC13534_04354 (recQ_3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sdj03019
]
NCTC13534_04354 (recQ_3)
03400 DNA repair and recombination proteins [BR:
sdj03400
]
NCTC13534_04354 (recQ_3)
Enzymes [BR:
sdj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NCTC13534_04354 (recQ_3)
Messenger RNA biogenesis [BR:
sdj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC13534_04354 (recQ_3)
DNA repair and recombination proteins [BR:
sdj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
NCTC13534_04354 (recQ_3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecQ_Zn_bind
Helicase_C
TrmB
HTH_41
Motif
Other DBs
NCBI-ProteinID:
VTQ03728
LinkDB
All DBs
Position
1:complement(3636518..3637552)
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AA seq
344 aa
AA seq
DB search
MGIDKPDVRFVVHLDIPDSLEAYYQEAGRAGRDGKKAYPVMLYQQSDRNELWENIDLSFP
DFQFIQQVYHHLCNYYQIAYGAGKGLTYDFDVVDFSKKYKLDVVKTLSALKFLERDKWLA
LSEAVYIPARIKFEVDYQELYRFQVQSAHFDPLIKAILRAYGGVFDYYVPINEFEIAKKI
GKPYEEVVKMLRSLQQQELATYVAKTDAPQLQFLQPRVDYKNLYIDTQFIAERKAIKEEQ
IKAIYQYLDGKDCRSLSLQHYFGEEATEPCGVCDLCVVRQHKSGVSESIEKKIQYLLLEK
PLPLHYLIEAIEIGKEEDRLKVLRSLMDSDTVKIEDELYHWNAF
NT seq
1035 nt
NT seq
+upstream
nt +downstream
nt
atgggcatagacaaacctgatgtcaggtttgttgtccaccttgatattccagattcttta
gaagcttattatcaagaggccggtagggcaggtagagatggtaaaaaagcataccccgtt
atgctgtatcaacagtctgatagaaatgagctttgggaaaatattgacctcagcttccct
gactttcaatttattcaacaggtgtaccatcatctatgcaattattatcaaatagcgtat
ggtgctggcaagggattgacttatgactttgatgtagttgatttttccaaaaaatataaa
ttggatgtcgtgaaaaccttgagtgcgctgaaatttttagagagggacaaatggttggcc
ctgagtgaggcggtttatattcctgctcgaattaaatttgaagtagattatcaagagtta
tatagatttcaagttcaaagcgcccattttgatccgttgatcaaagctattcttcgagct
tatggtggagtatttgattattatgttccaatcaatgaatttgaaattgcaaagaagatt
ggcaaaccttatgaagaggtcgttaagatgttaaggtccttacaacaacaagagctcgcc
acctatgtggccaaaactgatgcccctcagctacagtttctgcaacctcgagtggattat
aaaaatctttatatcgacactcagtttattgctgagcgaaaagcgataaaagaagagcaa
attaaagctatctatcaatatttggacggtaaggattgccgcagtttatcattacagcat
tattttggtgaagaggcgacagaaccgtgtggagtatgtgacctatgcgtggtcaggcag
cataaatcgggagtatctgaatccattgaaaagaaaatccaatatctcctattggaaaaa
ccattgccattgcattaccttatcgaagccatagaaatcggcaaggaagaagatcgtcta
aaagtcctgagaagcctgatggatagcgatacagtcaaaattgaagatgagctttaccat
tggaatgccttttaa
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